View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10065_low_7 (Length: 292)

Name: NF10065_low_7
Description: NF10065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10065_low_7
NF10065_low_7
[»] chr3 (16 HSPs)
chr3 (19-208)||(17003838-17004027)
chr3 (209-277)||(32319473-32319541)
chr3 (209-278)||(10179870-10179939)
chr3 (209-278)||(50934495-50934564)
chr3 (209-276)||(47426345-47426412)
chr3 (218-278)||(33509684-33509744)
chr3 (208-276)||(44380248-44380316)
chr3 (209-278)||(10018673-10018742)
chr3 (214-278)||(47186175-47186239)
chr3 (214-278)||(31187177-31187241)
chr3 (212-278)||(37742726-37742789)
chr3 (214-278)||(42664673-42664737)
chr3 (209-278)||(10123213-10123282)
chr3 (214-273)||(34029403-34029462)
chr3 (209-278)||(35094541-35094612)
chr3 (216-276)||(39498778-39498838)
[»] chr2 (4 HSPs)
chr2 (209-278)||(34392188-34392257)
chr2 (208-278)||(7381686-7381756)
chr2 (207-278)||(21603952-21604023)
chr2 (209-276)||(37358030-37358097)
[»] chr5 (11 HSPs)
chr5 (211-278)||(19357368-19357435)
chr5 (204-278)||(9827778-9827852)
chr5 (209-278)||(11607641-11607710)
chr5 (209-278)||(1826254-1826323)
chr5 (209-278)||(39570150-39570219)
chr5 (214-278)||(38010721-38010785)
chr5 (209-278)||(13015376-13015445)
chr5 (214-278)||(13086753-13086817)
chr5 (219-278)||(33858645-33858704)
chr5 (214-278)||(13478152-13478216)
chr5 (214-278)||(29989962-29990026)
[»] chr1 (9 HSPs)
chr1 (209-276)||(29119433-29119500)
chr1 (208-278)||(32676130-32676200)
chr1 (214-278)||(2569037-2569101)
chr1 (209-267)||(46435571-46435629)
chr1 (209-276)||(25161304-25161371)
chr1 (211-276)||(7214520-7214585)
chr1 (214-278)||(8809747-8809811)
chr1 (209-278)||(8462124-8462192)
chr1 (215-263)||(16679821-16679868)
[»] chr4 (13 HSPs)
chr4 (209-278)||(12473699-12473768)
chr4 (209-278)||(12528108-12528177)
chr4 (209-278)||(33249481-33249550)
chr4 (207-278)||(35869678-35869749)
chr4 (209-278)||(21260789-21260858)
chr4 (209-278)||(55590477-55590546)
chr4 (215-278)||(52910156-52910219)
chr4 (211-269)||(22343334-22343392)
chr4 (209-278)||(51811909-51811978)
chr4 (214-278)||(52012778-52012842)
chr4 (218-273)||(49998486-49998541)
chr4 (214-278)||(9799470-9799534)
chr4 (237-273)||(35781027-35781063)
[»] scaffold0032 (1 HSPs)
scaffold0032 (209-278)||(34189-34258)
[»] chr7 (6 HSPs)
chr7 (209-278)||(35341531-35341600)
chr7 (209-278)||(48250149-48250218)
chr7 (209-279)||(40856387-40856457)
chr7 (208-264)||(40893163-40893219)
chr7 (210-273)||(48072385-48072446)
chr7 (237-273)||(48072505-48072541)
[»] chr6 (6 HSPs)
chr6 (214-278)||(11753167-11753231)
chr6 (209-275)||(1211954-1212020)
chr6 (209-278)||(5403983-5404052)
chr6 (214-278)||(34245567-34245631)
chr6 (215-269)||(11113557-11113611)
chr6 (208-277)||(32644944-32645013)
[»] scaffold0229 (1 HSPs)
scaffold0229 (209-275)||(13116-13182)
[»] chr8 (6 HSPs)
chr8 (209-278)||(41179670-41179739)
chr8 (209-278)||(24337937-24338006)
chr8 (221-278)||(18168392-18168449)
chr8 (221-278)||(18631949-18632006)
chr8 (214-278)||(1514803-1514867)
chr8 (215-266)||(32825954-32826005)
[»] scaffold0263 (2 HSPs)
scaffold0263 (215-263)||(23094-23142)
scaffold0263 (215-278)||(23206-23263)
[»] scaffold0041 (1 HSPs)
scaffold0041 (208-264)||(73065-73121)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 17004027 - 17003838
Alignment:
Q  19 aagaaagcctgtgatgaacttgggattacattgattgcatattcaccaatagctcaaggtgaaatcctttttactatccaaaaccacaaattaaaagaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  17004027 aagaaagcctgtgatgaacttgggattacattgattgcatattcaccaatagctcaaggtgaaatcctttttactattcaaaaccacatattaaaagaat 17003928  T
Q  119 aatactacctctatccatttttcttagtacatacccttaaggttaataactggggcgtccggtgttcaaaactcggaccctgcatatatt 208  Q
    |||||||||||||||| ||||| |||||| ||||| ||||||||||||| ||||| |||||||||||||| |||||| ||||||||||||    
T  17003927 aatactacctctatccctttttattagtatatacctttaaggttaataagtggggtgtccggtgttcaaacctcggatcctgcatatatt 17003838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 32319541 - 32319473
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctac 277  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32319541 ggattctacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctac 32319473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 10179939 - 10179870
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||    
T  10179939 ggattccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctacc 10179870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 50934495 - 50934564
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  50934495 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttacc 50934564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 47426345 - 47426412
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccaccta 276  Q
    |||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||    
T  47426345 ggataccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcaccta 47426412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 33509684 - 33509744
Alignment:
Q  218 ttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||    
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctacc 33509744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 44380248 - 44380316
Alignment:
Q  208 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccaccta 276  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||| ||||||| |||||| ||||||    
T  44380248 tggattccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcaccta 44380316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 10018742 - 10018673
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||||||||| |||| |||| ||||||||||||| |||| | |||||||||||||||    
T  10018742 ggattccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctacc 10018673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 47186175 - 47186239
Alignment:
Q  214 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||| ||||    
T  47186175 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacatacc 47186239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 31187241 - 31187177
Alignment:
Q  214 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||| |||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| ||||    
T  31187241 ccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 31187177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 37742726 - 37742789
Alignment:
Q  212 ttccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||||||||   ||||||||| ||||||||||| |||||| |||||||||| |||||||||||    
T  37742726 ttccacttgtgta---ttaaggtaccaatggtatatatcattggtcaattagagtatgccacctacc 37742789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 42664673 - 42664737
Alignment:
Q  214 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||||||||| || | |||||| ||||| ||||| |||||||||||| ||||    
T  42664673 ccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacatacc 42664737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 10123282 - 10123213
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||||||||| |||  |||| |||||| || ||| |||| | |||||||||||||||    
T  10123282 ggattccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctacc 10123213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 34029462 - 34029403
Alignment:
Q  214 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccac 273  Q
    |||||||| |||||||||||||| |||| |||||| |||||  |||| ||||||||||||    
T  34029462 ccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccac 34029403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 35094541 - 35094612
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaat--tagagtgtgccacctacc 278  Q
    |||||||||||  |||||||||| |||| | ||||||||||||||| | |||  |||||| |||||||||||    
T  35094541 ggattccacttcagtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctacc 35094612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 39498838 - 39498778
Alignment:
Q  216 acttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccaccta 276  Q
    |||||||||||||||| |||| |||| ||||||  ||||| |||||| |||||| ||||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcaccta 39498778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 34392257 - 34392188
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  34392257 ggattccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctacc 34392188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 7381686 - 7381756
Alignment:
Q  208 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||    
T  7381686 tggattccgcttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctacc 7381756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 21603952 - 21604023
Alignment:
Q  207 ttggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||  ||||||||    
T  21603952 ttggattccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctacc 21604023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 37358097 - 37358030
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccaccta 276  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||| | |||||||||||| ||||||    
T  37358097 ggattccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcaccta 37358030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 19357435 - 19357368
Alignment:
Q  211 attccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  19357435 attccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctacc 19357368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 9827778 - 9827852
Alignment:
Q  204 atattggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || | |||||||||||| |||||||||    
T  9827778 atattggattccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctacc 9827852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 11607710 - 11607641
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  11607710 ggattccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctacc 11607641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 1826254 - 1826323
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||| |||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| ||||||||    
T  1826254 ggataccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctacc 1826323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 39570219 - 39570150
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||||||||||| |||||| |||  |||||||||||||||||||||||||||||||| ||||||||    
T  39570219 ggattccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctacc 39570150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 38010785 - 38010721
Alignment:
Q  214 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||| ||||    
T  38010785 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacatacc 38010721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 13015376 - 13015445
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||| ||||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| ||||    
T  13015376 ggataccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 13015445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 13086753 - 13086817
Alignment:
Q  214 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| ||||    
T  13086753 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 13086817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 33858704 - 33858645
Alignment:
Q  219 tgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||||||||||||| ||| ||||||| ||||| ||||||| |||||||||||||||    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctacc 33858645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 13478216 - 13478152
Alignment:
Q  214 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||||||||||||||| || |||| |||||| ||||| ||||| |||||||||||| ||||    
T  13478216 ccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacatacc 13478152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 29989962 - 29990026
Alignment:
Q  214 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||||||||  |||| |||||| ||||| ||||| |||||||||||| ||||    
T  29989962 ccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacatacc 29990026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 29119500 - 29119433
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccaccta 276  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29119500 ggataccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccaccta 29119433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 32676130 - 32676200
Alignment:
Q  208 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||  |||||||||    
T  32676130 tggattccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctacc 32676200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 2569037 - 2569101
Alignment:
Q  214 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctacc 2569101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 209 - 267
Target Start/End: Complemental strand, 46435629 - 46435571
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtg 267  Q
    |||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  46435629 ggataccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtg 46435571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 25161304 - 25161371
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccaccta 276  Q
    ||||||||||||||||||||||| ||   ||||||||||||||||| ||||||| |||||||||||||    
T  25161304 ggattccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccaccta 25161371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 7214585 - 7214520
Alignment:
Q  211 attccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccaccta 276  Q
    |||||| ||||||||||||||||||||||| |||||||  ||||| ||||||||||||| ||||||    
T  7214585 attccatttgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtcaccta 7214520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 8809811 - 8809747
Alignment:
Q  214 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| ||||    
T  8809811 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtacc 8809747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 8462124 - 8462192
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||  ||||| |||| ||||||||||| |||||  |||||| |||||||||||||||    
T  8462124 ggattccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctacc 8462192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 16679868 - 16679821
Alignment:
Q  215 cacttgtgtaccattaaggtactaatggtatataccattggccaattag 263  Q
    |||||||||||||||||||||| |||| ||||||| ||| |||||||||    
T  16679868 cacttgtgtaccattaaggtaccaatgttatatactatt-gccaattag 16679821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 12473699 - 12473768
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12473699 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacc 12473768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 12528108 - 12528177
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12528108 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacc 12528177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 33249550 - 33249481
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||    
T  33249550 ggatttcacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctacc 33249481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 207 - 278
Target Start/End: Complemental strand, 35869749 - 35869678
Alignment:
Q  207 ttggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||||||||||||    
T  35869749 ttggtttccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctacc 35869678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 21260789 - 21260858
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||| | |||||||||||||| |||| |||||| |||||||||||||||||||| ||||||||    
T  21260789 ggattccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctacc 21260858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 55590477 - 55590546
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||  |||||| |||||| ||||||||    
T  55590477 ggattccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctacc 55590546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 52910219 - 52910156
Alignment:
Q  215 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||||||||| | ||||| |||| |||||||||||||||||||| |||||||||||||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctacc 52910156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 22343334 - 22343392
Alignment:
Q  211 attccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtg 269  Q
    |||||||||||||||||||||||||  ||||||||||| ||||| ||||||||||||||    
T  22343334 attccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtg 22343392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 51811909 - 51811978
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||||| ||||||||||||||||  || | ||||||  |||||||||||||||| |||||||||||    
T  51811909 ggattccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctacc 51811978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 52012778 - 52012842
Alignment:
Q  214 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||| | |||||||||| ||||    
T  52012778 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacatacc 52012842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 49998486 - 49998541
Alignment:
Q  218 ttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccac 273  Q
    ||||||||||||||||||| |||  |||||| |||||||||||||| |||||||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 9799534 - 9799470
Alignment:
Q  214 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||| |||||||||||||| |||| |||||| ||||| ||||  ||| |||||||| ||||    
T  9799534 ccacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacatacc 9799470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 35781063 - 35781027
Alignment:
Q  237 taatggtatataccattggccaattagagtgtgccac 273  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  35781063 taatggtatataccattgcccaattagaatgtgccac 35781027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 34189 - 34258
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||| ||||    
T  34189 ggattccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttacc 34258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 35341531 - 35341600
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||||||||||||||||||||||| |||| |||||||||||| ||||||| |||||||||||||||    
T  35341531 ggattccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctacc 35341600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 48250149 - 48250218
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||| ||||||||||||||||||||||| |||| |||||| |||||| ||||||||||||||||||||||    
T  48250149 ggataccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctacc 48250218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 279
Target Start/End: Original strand, 40856387 - 40856457
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacct 279  Q
    |||| |||||| |||| |||||||||||||||| ||||||  ||||  ||||||||||||| |||||||||    
T  40856387 ggataccacttatgtatcattaaggtactaatgatatatattattgatcaattagagtgtgtcacctacct 40856457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 40893219 - 40893163
Alignment:
Q  208 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattaga 264  Q
    ||||| |||||||| |||||| || ||| ||||||||||||||||||| ||||||||    
T  40893219 tggataccacttgtataccatcaaagtattaatggtatataccattggtcaattaga 40893163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 48072385 - 48072446
Alignment:
Q  210 gattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccac 273  Q
    |||||||||||||||| |||||||||| ||| |  ||||||||||  |||||||||||||||||    
T  48072385 gattccacttgtgtactattaaggtaccaatag--tataccattgatcaattagagtgtgccac 48072446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 48072541 - 48072505
Alignment:
Q  237 taatggtatataccattggccaattagagtgtgccac 273  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  48072541 taatggtatataccattgcccaattagaatgtgccac 48072505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 11753167 - 11753231
Alignment:
Q  214 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||    
T  11753167 ccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacc 11753231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 1212020 - 1211954
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacct 275  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  1212020 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacct 1211954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 5404052 - 5403983
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||| |||||||||||||||||||||||||||||||||||  ||||| || ||||||| |||||||||||    
T  5404052 ggataccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctacc 5403983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 34245567 - 34245631
Alignment:
Q  214 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||| | |||||||||| ||||    
T  34245567 ccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtacc 34245631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 11113557 - 11113611
Alignment:
Q  215 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtg 269  Q
    |||||||||||||||||||||| |||| |||||| ||||| | ||| ||||||||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtg 11113611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 32645013 - 32644944
Alignment:
Q  208 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctac 277  Q
    |||||||||| |||||||||||||| ||   || ||||||| |||||||||||||  ||||| |||||||    
T  32645013 tggattccacctgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctac 32644944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 13182 - 13116
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacct 275  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  13182 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacct 13116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 41179739 - 41179670
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||||||||||||||||||||||| |||| |||||| ||||||||||||| |||||| ||||||||    
T  41179739 ggattccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctacc 41179670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 24338006 - 24337937
Alignment:
Q  209 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||| |||||||||||| |||||||||  ||||||||||||||| || |||||||||||||||| |||||    
T  24338006 ggataccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctacc 24337937  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 18168392 - 18168449
Alignment:
Q  221 tgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||||||||||| ||||||||||| |||||  |||||||||||| |||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctacc 18168449  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 18631949 - 18632006
Alignment:
Q  221 tgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||||||||||| ||||||||||| |||||  |||||||||||| |||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctacc 18632006  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 1514803 - 1514867
Alignment:
Q  214 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    ||||||||||||||||||||||| |||| |||||| |||||  |||| ||||||| |||| ||||    
T  1514803 ccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacatacc 1514867  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 32826005 - 32825954
Alignment:
Q  215 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagt 266  Q
    ||||||||||||||||| |||  |||| | ||||||||||||||||||||||    
T  32826005 cacttgtgtaccattaaagtatcaatgttgtataccattggccaattagagt 32825954  T

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Target: scaffold0263 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 23094 - 23142
Alignment:
Q  215 cacttgtgtaccattaaggtactaatggtatataccattggccaattag 263  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||    
T  23094 cacttgtgtatcattaaggtaccaatggtatatactattggccaattag 23142  T

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Target: scaffold0263; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 23263 - 23206
Alignment:
Q  215 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 278  Q
    |||||||||||||||||||||| |      |||| |||||||||||||||||||||||||||||    
T  23263 cacttgtgtaccattaaggtacga------tatatcattggccaattagagtgtgccacctacc 23206  T

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Target: scaffold0041 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 73065 - 73121
Alignment:
Q  208 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattaga 264  Q
    ||||| |||||||| |||||| || ||| ||||||||||||||||||| ||||||||    
T  73065 tggataccacttgtataccatcaaagtattaatggtatataccattggtcaattaga 73121  T

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