View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10065_low_9 (Length: 248)
Name: NF10065_low_9
Description: NF10065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10065_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 27 - 231
Target Start/End: Complemental strand, 28226194 - 28225990
Alignment:
| Q |
27 |
tcaactttgattcggtccagtggtctagcccaaaagcaaccagactattttggtccggcccggttggaccgttggagcagggcaactaattaaacttttt |
126 |
Q |
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| T |
28226194 |
tcaactttgattcggtccagtggtctaacccaaaagcaaccagactattttggtccggcccggttgaaccgctggatcagagcaactgattaaacttttt |
28226095 |
T |
|
| Q |
127 |
tctttgtaaaatgtgccaataggagtatatatgtgcactcttaatttaaagtgcatgatcttttttctttaagtacatgatcttaacatgaggagtaatt |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28226094 |
tctttgtaaaatgtgccaataggagtatatatgtgcactcttaatttaaagtgcatgatcttttttctttaagtacatgatcttaacatgaagagtaatt |
28225995 |
T |
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| Q |
227 |
ttagc |
231 |
Q |
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||||| |
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| T |
28225994 |
ttagc |
28225990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 28208511 - 28208310
Alignment:
| Q |
27 |
tcaactttgattcggtccagtggtctagcccaaaagcaaccagactattttggtccggcccggttggaccgttggagcagggcaactaattaaacttttt |
126 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||| |||| ||| ||| || |||||||||||| |
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| T |
28208511 |
tcaactttgattcggttcagtgatctagcccaaaagcaaccagactattttggtccggtccagttggaccgctggatcagagcagctgattaaacttttt |
28208412 |
T |
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| Q |
127 |
tctttgtaaaatgtgccaataggagtatatatgtgcactcttaatttaaagtgcatgatcttttttctttaagtacatgatcttaacatgaggagtaatt |
226 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28208411 |
tctttgtaaaatgtgccaataagagtatatatgtgcactcttaatttaaagtgcatgatcttttttctttaagtacatgatgttaacatgaggagtaatt |
28208312 |
T |
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| Q |
227 |
tt |
228 |
Q |
| |
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|| |
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| T |
28208311 |
tt |
28208310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 28208293 - 28208256
Alignment:
| Q |
211 |
aacatgaggagtaattttagcgcaactgataaagttgt |
248 |
Q |
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||||||||||||||||||||| ||| |||||||||||| |
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| T |
28208293 |
aacatgaggagtaattttagctcaaatgataaagttgt |
28208256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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