View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10066_high_1 (Length: 511)

Name: NF10066_high_1
Description: NF10066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10066_high_1
NF10066_high_1
[»] chr1 (3 HSPs)
chr1 (334-471)||(23203409-23203547)
chr1 (260-333)||(23204849-23204922)
chr1 (26-94)||(33161430-33161498)
[»] chr5 (11 HSPs)
chr5 (18-163)||(41900181-41900326)
chr5 (52-250)||(32268817-32269021)
chr5 (260-333)||(32250396-32250470)
chr5 (271-333)||(32255881-32255943)
chr5 (260-333)||(32264927-32265000)
chr5 (21-77)||(32268762-32268818)
chr5 (335-370)||(32264762-32264797)
chr5 (113-153)||(41886296-41886336)
chr5 (366-419)||(32255573-32255626)
chr5 (334-370)||(32255711-32255747)
chr5 (428-492)||(32264611-32264675)
[»] chr4 (8 HSPs)
chr4 (260-333)||(28719574-28719647)
chr4 (26-89)||(6007662-6007725)
chr4 (29-94)||(55907434-55907499)
chr4 (105-153)||(1488824-1488872)
chr4 (33-88)||(2525761-2525816)
chr4 (109-154)||(1537250-1537295)
chr4 (28-93)||(2168015-2168080)
chr4 (46-90)||(2625367-2625411)
[»] chr7 (4 HSPs)
chr7 (22-96)||(15091347-15091421)
chr7 (35-94)||(10168806-10168865)
chr7 (35-94)||(10176331-10176390)
chr7 (116-157)||(10616209-10616250)
[»] chr3 (2 HSPs)
chr3 (26-96)||(513426-513496)
chr3 (111-153)||(51120330-51120372)
[»] chr2 (2 HSPs)
chr2 (29-94)||(1036176-1036241)
chr2 (105-153)||(45244526-45244574)
[»] chr8 (2 HSPs)
chr8 (31-94)||(32152208-32152271)
chr8 (108-153)||(17642614-17642659)
[»] chr6 (1 HSPs)
chr6 (26-87)||(6395772-6395833)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 334 - 471
Target Start/End: Complemental strand, 23203547 - 23203409
Alignment:
334 tagttacttgcaattatttgcatctt-ataattttatcaagtatgtgtagctggtcccttccattgtatgtgtctgggtttgcccttgtcggttcataaa 432  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||    
23203547 tagttacttgcaattatttgcatctttataattttatcaagtatgtgtagctggtcccttccattgtatgagtctgagattgcccttgtcagttcataaa 23203448  T
433 aaagatgtagattcaaccaaggccctctcttccttaatg 471  Q
     |||||||||||||| ||||||||||||| |||||||||    
23203447 caagatgtagattcacccaaggccctctcctccttaatg 23203409  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 23204922 - 23204849
Alignment:
260 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgtttgtctctgagagcccaattaatcatatt 333  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
23204922 cttgcaccacagaagacagtttcaaccatatcaatgaactcttgttcgtctctgagagtccaattaatcatatt 23204849  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 33161430 - 33161498
Alignment:
26 gtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 94  Q
    ||||| |||||||||||| | || | ||||||||| ||||||||||||||||| || ||||| ||||||    
33161430 gtgagtgagaatcgaagactattagtgatggagagaaactgtttggagacgagggatagagaattcaag 33161498  T

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Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 41900326 - 41900181
Alignment:
18 cacagactgtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaagcatacattgtcgtcgttgaggaa 117  Q
    |||||| ||| ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||| |   ||| ||||| ||||||||    
41900326 cacagattgtaagagagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaagtagtgattatcgtctttgaggaa 41900227  T
118 tttgaagacacattcgcaacactcatctggtaaatatgaaccagaa 163  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
41900226 tttgaagacacattcccaacactcatctggtaaatatgaaccagaa 41900181  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 52 - 250
Target Start/End: Original strand, 32268817 - 32269021
Alignment:
52 gatggagagcaactgtttggagacgagtgagagagatttcaagcatacattgtcgtcgttgaggaatttgaagacacattcgcaacactcatctggtaaa 151  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||  ||||| ||| || | |||||||||||||||||| ||||||||||||||||||    
32268817 gatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtaaa 32268916  T
152 tatgaaccagaaatatatcattgatt---ttcttctttttgcatcactg-------atgttctacttcttctttttgtttgagtggacttcatagttgcc 241  Q
    ||||||||||||    ||||||||||   ||||||||||||||||||||       ||||||| ||||||||||||||   |||||||| |||||||  |    
32268917 tatgaaccagaa----atcattgattttcttcttctttttgcatcactggaccgcaatgttcttcttcttctttttgtcgaagtggactccatagttagc 32269012  T
242 agatgagtg 250  Q
    |||||||||    
32269013 agatgagtg 32269021  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 32250470 - 32250396
Alignment:
260 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgtttgtctc-tgagagcccaattaatcatatt 333  Q
    |||| |||||||||||||||||||||  |||||| ||||||||||||||||| | ||||||||||||||||||||    
32250470 cttgaaccacggaagacagtttcaacggtatcaacgaactcttgtttgtctcttcagagcccaattaatcatatt 32250396  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 32255943 - 32255881
Alignment:
271 gaagacagtttcaaccatatcaatgaactcttgtttgtctctgagagcccaattaatcatatt 333  Q
    |||||||||||||||  |||||| |||||||||||||||||||||| ||||||||||| ||||    
32255943 gaagacagtttcaacggtatcaacgaactcttgtttgtctctgagaacccaattaatcttatt 32255881  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 32265000 - 32264927
Alignment:
260 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgtttgtctctgagagcccaattaatcatatt 333  Q
    |||||||| | |||||||||||||||  |||||| |||||||||||||||||||| | ||||||||||| ||||    
32265000 cttgcaccgcagaagacagtttcaacggtatcaacgaactcttgtttgtctctgataacccaattaatcttatt 32264927  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 32268762 - 32268818
Alignment:
21 agactgtgagagagaatcgaagattgttggagatggagagcaactgtttggagacga 77  Q
    |||||||||||||||||||||||  ||||| ||||||||| ||||||||||||||||    
32268762 agactgtgagagagaatcgaagacggttggtgatggagagtaactgtttggagacga 32268818  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 335 - 370
Target Start/End: Complemental strand, 32264797 - 32264762
Alignment:
335 agttacttgcaattatttgcatcttataattttatc 370  Q
    ||||||||||||||||||||||||||||||||||||    
32264797 agttacttgcaattatttgcatcttataattttatc 32264762  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 41886336 - 41886296
Alignment:
113 aggaatttgaagacacattcgcaacactcatctggtaaata 153  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
41886336 aggaatttgaagacacattcccaacactcatcaggtaaata 41886296  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 32255626 - 32255573
Alignment:
366 ttatcaagtatgtgtagctggtcccttccattgtatgtgtctgggtttgccctt 419  Q
    ||||||||||||||||  ||||||| |||||||||||  ||||||| |||||||    
32255626 ttatcaagtatgtgtatatggtcccatccattgtatgaatctgggtgtgccctt 32255573  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 370
Target Start/End: Complemental strand, 32255747 - 32255711
Alignment:
334 tagttacttgcaattatttgcatcttataattttatc 370  Q
    |||||||||||||||| ||||||| ||||||||||||    
32255747 tagttacttgcaattacttgcatcatataattttatc 32255711  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 492
Target Start/End: Complemental strand, 32264675 - 32264611
Alignment:
428 ataaaaaagatgtagattcaaccaaggccctctcttccttaatgttagtctatgtttaggggaaa 492  Q
    ||||| ||| |||||||||||||||| |||||||  |||||||||| ||||  ||||| ||||||    
32264675 ataaacaagttgtagattcaaccaagtccctctcccccttaatgttggtcttagtttaagggaaa 32264611  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 28719647 - 28719574
Alignment:
260 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgtttgtctctgagagcccaattaatcatatt 333  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
28719647 cttgcaccatggaagacagtttcaacgatatcaatgaactcttgtttgtctctgagagcccaattaatcttatt 28719574  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 6007662 - 6007725
Alignment:
26 gtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatt 89  Q
    |||||||||||||| ||| |||||| ||||||||| |||||||| |||||||| ||||||||||    
6007662 gtgagagagaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagagatt 6007725  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 55907499 - 55907434
Alignment:
29 agagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 94  Q
    ||||||||||||||| |||||| ||  ||||| |||||||||||||||  ||||||||||||||||    
55907499 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 55907434  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 1488872 - 1488824
Alignment:
105 cgtcgttgaggaatttgaagacacattcgcaacactcatctggtaaata 153  Q
    |||||||||||||||||| ||||||||| || |||||||| ||||||||    
1488872 cgtcgttgaggaatttgacgacacattcccagcactcatcaggtaaata 1488824  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 2525761 - 2525816
Alignment:
33 agaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagat 88  Q
    ||||||||||| |||||| |||||| || |||||||| |||||||| |||||||||    
2525761 agaatcgaagactgttggtgatggacagaaactgttttgagacgagggagagagat 2525816  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 1537295 - 1537250
Alignment:
109 gttgaggaatttgaagacacattcgcaacactcatctggtaaatat 154  Q
    |||||||||| |||| |||||||| ||||||||||| |||||||||    
1537295 gttgaggaatctgaatacacattcccaacactcatcaggtaaatat 1537250  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 2168015 - 2168080
Alignment:
28 gagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaa 93  Q
    |||||||||||||||| | |||| |||||| || ||||| |||||||| | ||||||||| |||||    
2168015 gagagagaatcgaagactattggtgatggacagaaactgcttggagacaactgagagagacttcaa 2168080  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 2625411 - 2625367
Alignment:
46 gttggagatggagagcaactgtttggagacgagtgagagagattt 90  Q
    ||||||||||||||| || ||||||||||| || |||||||||||    
2625411 gttggagatggagagaaaatgtttggagactagcgagagagattt 2625367  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 15091421 - 15091347
Alignment:
22 gactgtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaagca 96  Q
    |||| ||||||| ||| ||||| |||||| ||||||||| ||||||||||||||||| |||||||| ||||||||    
15091421 gactctgagagaaaatagaagactgttggtgatggagaggaactgtttggagacgagggagagagaattcaagca 15091347  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 10168865 - 10168806
Alignment:
35 aatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 94  Q
    ||||||||| |||||| ||||||||| |||||||||||||| || || ||||| ||||||    
10168865 aatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10168806  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 10176390 - 10176331
Alignment:
35 aatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 94  Q
    ||||||||| |||||| ||||||||| |||||||||||||| || || ||||| ||||||    
10176390 aatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10176331  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 10616209 - 10616250
Alignment:
116 aatttgaagacacattcgcaacactcatctggtaaatatgaa 157  Q
    |||||||||| |||||| ||||||||||| ||||||||||||    
10616209 aatttgaagatacattcccaacactcatcaggtaaatatgaa 10616250  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 513496 - 513426
Alignment:
26 gtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaagca 96  Q
    |||||||||||||| |||||||||| ||||||||| |||||||| ||||||   |||||||||||||||||    
513496 gtgagagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaagca 513426  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 51120372 - 51120330
Alignment:
111 tgaggaatttgaagacacattcgcaacactcatctggtaaata 153  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||    
51120372 tgaggaatttgaagacacattcccaacagtcatcaggtaaata 51120330  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 1036241 - 1036176
Alignment:
29 agagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 94  Q
    ||||||||||||||| |||||| ||  ||||| |||||||||||||||  ||||||||||||||||    
1036241 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 1036176  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 45244574 - 45244526
Alignment:
105 cgtcgttgaggaatttgaagacacattcgcaacactcatctggtaaata 153  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||||||    
45244574 cgtcgttgaggaatttcaagacacattcccaacactcatcaggtaaata 45244526  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 32152208 - 32152271
Alignment:
31 agagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 94  Q
    ||||||||| ||| |||||| ||||||||| ||||||||||||||||| ||||| || ||||||    
32152208 agagaatcggagactgttggtgatggagaggaactgtttggagacgagggagagtgaattcaag 32152271  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 17642659 - 17642614
Alignment:
108 cgttgaggaatttgaagacacattcgcaacactcatctggtaaata 153  Q
    |||||||||||||||||||| | || ||||||||||| ||||||||    
17642659 cgttgaggaatttgaagacagactcccaacactcatcaggtaaata 17642614  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 6395772 - 6395833
Alignment:
26 gtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagaga 87  Q
    ||||| || ||||||||||  |||| ||||||||| ||||| ||||||||||| ||||||||    
6395772 gtgagtgaaaatcgaagatgattggtgatggagaggaactgcttggagacgagggagagaga 6395833  T

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