View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10066_high_9 (Length: 241)

Name: NF10066_high_9
Description: NF10066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10066_high_9
NF10066_high_9
[»] chr7 (10 HSPs)
chr7 (18-241)||(5937247-5937470)
chr7 (132-232)||(25956464-25956563)
chr7 (191-241)||(2143853-2143902)
chr7 (200-241)||(1885583-1885624)
chr7 (200-241)||(2144547-2144588)
chr7 (194-237)||(44172892-44172935)
chr7 (200-241)||(22801749-22801790)
chr7 (200-237)||(37775996-37776033)
chr7 (200-241)||(37820090-37820131)
chr7 (200-241)||(48964070-48964111)
[»] chr2 (7 HSPs)
chr2 (130-241)||(43585943-43586054)
chr2 (200-241)||(13501086-13501127)
chr2 (200-241)||(14450803-14450844)
chr2 (200-241)||(24067263-24067304)
chr2 (200-238)||(8300227-8300265)
chr2 (200-241)||(24067760-24067801)
chr2 (205-237)||(13558774-13558806)
[»] chr8 (8 HSPs)
chr8 (200-241)||(26915248-26915289)
chr8 (172-239)||(42874534-42874601)
chr8 (200-241)||(31119097-31119138)
chr8 (208-241)||(6960692-6960725)
chr8 (200-241)||(10497824-10497865)
chr8 (200-241)||(24295145-24295186)
chr8 (200-241)||(27733857-27733898)
chr8 (200-241)||(34073986-34074027)
[»] chr4 (14 HSPs)
chr4 (200-241)||(44362676-44362717)
chr4 (191-241)||(13307887-13307937)
chr4 (200-238)||(37496717-37496755)
chr4 (200-231)||(11797636-11797667)
chr4 (200-231)||(47492399-47492430)
chr4 (191-241)||(13117439-13117489)
chr4 (200-237)||(683066-683103)
chr4 (200-237)||(9988707-9988744)
chr4 (200-241)||(10164862-10164903)
chr4 (200-237)||(20119959-20119996)
chr4 (207-240)||(43476811-43476844)
chr4 (205-237)||(8457939-8457971)
chr4 (200-240)||(22799901-22799941)
chr4 (207-235)||(40224513-40224541)
[»] chr6 (9 HSPs)
chr6 (191-241)||(6751881-6751931)
chr6 (200-241)||(10031580-10031621)
chr6 (200-241)||(19369827-19369868)
chr6 (200-241)||(5579664-5579705)
chr6 (200-237)||(10157998-10158035)
chr6 (170-231)||(26402658-26402719)
chr6 (200-241)||(31327825-31327866)
chr6 (209-241)||(29959185-29959217)
chr6 (205-241)||(31430290-31430326)
[»] chr5 (4 HSPs)
chr5 (202-241)||(30080511-30080550)
chr5 (200-241)||(16207599-16207640)
chr5 (200-241)||(21319953-21319994)
chr5 (205-241)||(42192286-42192322)
[»] scaffold0314 (1 HSPs)
scaffold0314 (200-241)||(8958-8999)
[»] chr1 (7 HSPs)
chr1 (200-241)||(18946042-18946083)
chr1 (202-241)||(24462280-24462319)
chr1 (200-241)||(24176829-24176871)
chr1 (191-240)||(7888106-7888155)
chr1 (200-237)||(8203835-8203872)
chr1 (205-237)||(14332422-14332454)
chr1 (209-237)||(41017421-41017449)
[»] chr3 (6 HSPs)
chr3 (199-237)||(17568690-17568728)
chr3 (204-241)||(14338495-14338532)
chr3 (192-237)||(19323448-19323493)
chr3 (200-241)||(49179723-49179764)
chr3 (177-233)||(1502592-1502648)
chr3 (205-237)||(42667634-42667666)
[»] scaffold0504 (1 HSPs)
scaffold0504 (200-241)||(8705-8746)
[»] scaffold0024 (1 HSPs)
scaffold0024 (200-241)||(18116-18157)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 5937247 - 5937470
Alignment:
Q  18 gattcaagattcttagtggcttcaaatgagacaaagggaagagctaaattgaaaaagagcagtactgtttaattactatcatgtttgaaaattgaatcat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5937247 gattcaagattcttagtggcttcaaatgagacaaagggaagagctaaattgaaaaagagcagtactgtttaattactatcatgtttgaaaattgaatcat 5937346  T
Q  118 tgaagagggagaacctctattgcacgtacacttcatattgaaggcgtattctggtgtccgacgtgtattgtgaccgacacatacacttgtgattacatta 217  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||     
T  5937347 tgaagagggagaatctctattgcacggacacttcatattgaaggcgtattctggtgtccgacatgtatcgtgaccgacacagacacttgtgattacattg 5937446  T
Q  218 aattatgtcattttctcaaaattt 241  Q
    ||||||||||||||||||||||||    
T  5937447 aattatgtcattttctcaaaattt 5937470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 232
Target Start/End: Complemental strand, 25956563 - 25956464
Alignment:
Q  132 ctctattgcacgtacacttcatattgaaggcgtattctggtgtccgacgtgtattgtgaccgacacatacacttgtgattacattaaattatgtcatttt 231  Q
    |||||||||||| |||||||  ||||||||||| | | | |||||||| ||||| ||| |||||||  ||||||||||||||||| ||||||||||||||    
T  25956563 ctctattgcacggacacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 25956465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 2143853 - 2143902
Alignment:
Q  191 ccgacacatacacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||| ||| |||||||||||| ||||||||||||||||||||||||    
T  2143853 ccgacacat-cacatgtgattacattgaattatgtcattttctcaaaattt 2143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 1885624 - 1885583
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  1885624 acacttgtgattacattgaattatgtcattttttcaaaattt 1885583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 2144547 - 2144588
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  2144547 acacgtgtgattacattgaattatgtcattttctcaaaattt 2144588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 44172892 - 44172935
Alignment:
Q  194 acacatacacttgtgattacattaaattatgtcattttctcaaa 237  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||    
T  44172892 acacaaacacatgtgattacattgaattatgtcattttctcaaa 44172935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 22801749 - 22801790
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||| | |||||||||||| |||||||||||    
T  22801749 acacttgtgattacagtgaattatgtcattatctcaaaattt 22801790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 37776033 - 37775996
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaa 237  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  37776033 acacatgtgattacatttaattatgtcattttctcaaa 37775996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 37820131 - 37820090
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||| |||||||||||||||||| ||||| |||||||||    
T  37820131 acacttgcgattacattaaattatgttattttttcaaaattt 37820090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 48964070 - 48964111
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||| ||| |||||||||||||||||| |||||    
T  48964070 acacttgtgattaaattgaattatgtcattttctcacaattt 48964111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 43585943 - 43586054
Alignment:
Q  130 acctctattgcacgtacacttcatattgaaggcgtattctggtgtccgacgtgtattgtgaccgacacatacacttgtgattacattaaattatgtcatt 229  Q
    |||||| ||||||| |||||||  |||||||| || | |  ||||| |||  |||| ||| |||||||  ||||||||||||||||| ||||||||||||    
T  43585943 acctctgttgcacgaacacttctgattgaaggtgtgtccatgtgtctgacacgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatt 43586042  T
Q  230 ttctcaaaattt 241  Q
    ||||||||||||    
T  43586043 ttctcaaaattt 43586054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 13501086 - 13501127
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  13501086 acacttgtgattacattgaattatgtcattttcttaaaattt 13501127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 14450803 - 14450844
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||||| |||||||| |||||||||||||||    
T  14450803 acacttgtgattacattgaattatgtgattttctcaaaattt 14450844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 24067304 - 24067263
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||||| ||||||||||||||| ||||||||    
T  24067304 acacttgtgattacattgaattatgtcattttcacaaaattt 24067263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 8300227 - 8300265
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaa 238  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  8300227 acacttatgattacactaaattatgtcattttctcaaaa 8300265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 24067801 - 24067760
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    |||||||||||| |||| ||||||| ||||||||||||||||    
T  24067801 acacttgtgatttcatttaattatgacattttctcaaaattt 24067760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 13558774 - 13558806
Alignment:
Q  205 tgtgattacattaaattatgtcattttctcaaa 237  Q
    ||||||| |||||||||||||||||||||||||    
T  13558774 tgtgattgcattaaattatgtcattttctcaaa 13558806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 26915248 - 26915289
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26915248 acacttgtgattacattaaattatgtcattttctcaaaattt 26915289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 42874601 - 42874534
Alignment:
Q  172 tgtccgacgtgtattgtgaccgacacatacacttgtgattacattaaattatgtcattttctcaaaat 239  Q
    |||||||| ||| ||||| || ||||  ||||||||||||||||| ||||||||||||||||||||||    
T  42874601 tgtccgacatgtgttgtgtccaacactgacacttgtgattacattgaattatgtcattttctcaaaat 42874534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 31119138 - 31119097
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  31119138 acacttgtgattacattgaattatgtcattttctcaaaattt 31119097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 6960692 - 6960725
Alignment:
Q  208 gattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||||||||||||||||||||||    
T  6960692 gattacattaaattatgtcattttctcaaaattt 6960725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 10497824 - 10497865
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  10497824 acacttgtgattacatcaaattatgttattttctcaaaattt 10497865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 24295145 - 24295186
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    |||||||||||||||||||||| ||||||||||||| |||||    
T  24295145 acacttgtgattacattaaattgtgtcattttctcacaattt 24295186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 27733898 - 27733857
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  27733898 acacttgtgattacattgaattatatcattttctcaaaattt 27733857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 34073986 - 34074027
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
T  34073986 acacttatgattacattaaattatgtcattttttcaaaattt 34074027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 44362717 - 44362676
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44362717 acacttgtgattacattaaattatgtcattttctcaaaattt 44362676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 13307937 - 13307887
Alignment:
Q  191 ccgacacatacacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    |||||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  13307937 ccgacaccaacacttgtgattacattgaattatgtcattttctcaaaattt 13307887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 37496755 - 37496717
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaa 238  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  37496755 acacttgtgattacattgaattatgtcattttctcaaaa 37496717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 231
Target Start/End: Original strand, 11797636 - 11797667
Alignment:
Q  200 acacttgtgattacattaaattatgtcatttt 231  Q
    ||||||||||||||||||||||||||||||||    
T  11797636 acacttgtgattacattaaattatgtcatttt 11797667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 231
Target Start/End: Complemental strand, 47492430 - 47492399
Alignment:
Q  200 acacttgtgattacattaaattatgtcatttt 231  Q
    ||||||||||||||||||||||||||||||||    
T  47492430 acacttgtgattacattaaattatgtcatttt 47492399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 13117489 - 13117439
Alignment:
Q  191 ccgacacatacacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    |||||||  ||||||||||||||||| |||| |||||||||||| ||||||    
T  13117489 ccgacaccgacacttgtgattacattgaattttgtcattttctccaaattt 13117439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 683103 - 683066
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaa 237  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  683103 acacatgtgattacattcaattatgtcattttctcaaa 683066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 9988707 - 9988744
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaa 237  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  9988707 acacatgtgattacattcaattatgtcattttctcaaa 9988744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 10164862 - 10164903
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||||| |||||||||||||| |||| ||||    
T  10164862 acacttgtgattacattgaattatgtcattttttcaagattt 10164903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 20119996 - 20119959
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaa 237  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  20119996 acacatgtgattacattaaattatttcattttctcaaa 20119959  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 43476844 - 43476811
Alignment:
Q  207 tgattacattaaattatgtcattttctcaaaatt 240  Q
    ||||||||||||||||||||||| ||||||||||    
T  43476844 tgattacattaaattatgtcattctctcaaaatt 43476811  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 8457971 - 8457939
Alignment:
Q  205 tgtgattacattaaattatgtcattttctcaaa 237  Q
    |||||||||||| ||||||||||||||||||||    
T  8457971 tgtgattacattcaattatgtcattttctcaaa 8457939  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 22799901 - 22799941
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaatt 240  Q
    |||| |||||||||||| |||||||||||||||| ||||||    
T  22799901 acacgtgtgattacattgaattatgtcattttctaaaaatt 22799941  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 40224513 - 40224541
Alignment:
Q  207 tgattacattaaattatgtcattttctca 235  Q
    |||||||||||||||||||||||||||||    
T  40224513 tgattacattaaattatgtcattttctca 40224541  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 6751881 - 6751931
Alignment:
Q  191 ccgacacatacacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    |||||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  6751881 ccgacaccgacacttgtgattacattgaattatgtcattttctcaaaattt 6751931  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 10031621 - 10031580
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  10031621 acacttgtgattacattgaattatgtcattttctcaaaattt 10031580  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 19369868 - 19369827
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  19369868 acacttgtgattacattgaattatgtcattttctcaaaattt 19369827  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 5579705 - 5579664
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    |||||||||| |||||| || |||||||||||||||||||||    
T  5579705 acacttgtgactacattgaactatgtcattttctcaaaattt 5579664  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 10158035 - 10157998
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaa 237  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  10158035 acacatgtgattacattgaattatgtcattttctcaaa 10157998  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 26402658 - 26402719
Alignment:
Q  170 ggtgtccgacgtgtattgtgaccgacacatacacttgtgattacattaaattatgtcatttt 231  Q
    ||||||| || ||||| ||| |||||||  ||||||||||||||| | ||||||||||||||    
T  26402658 ggtgtccaacatgtatcgtgtccgacaccgacacttgtgattacactgaattatgtcatttt 26402719  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 31327866 - 31327825
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    |||||||||||| ||||||||||||| ||||||| |||||||    
T  31327866 acacttgtgattgcattaaattatgtaattttcttaaaattt 31327825  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 29959217 - 29959185
Alignment:
Q  209 attacattaaattatgtcattttctcaaaattt 241  Q
    |||||||| ||||||||||||||||||||||||    
T  29959217 attacattgaattatgtcattttctcaaaattt 29959185  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 31430326 - 31430290
Alignment:
Q  205 tgtgattacattaaattatgtcattttctcaaaattt 241  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  31430326 tgtgattacatttaatcatgtcattttctcaaaattt 31430290  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 30080511 - 30080550
Alignment:
Q  202 acttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  30080511 acttgtgattacattgaattatgtcattttctcaaaattt 30080550  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 16207599 - 16207640
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||||| |||||||||| |||||| ||||||    
T  16207599 acacttgtgattacattgaattatgtcaatttctctaaattt 16207640  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 21319953 - 21319994
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||||| |||||| ||||||| |||||||||    
T  21319953 acacttgtgattacattgaattatatcattttttcaaaattt 21319994  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 42192322 - 42192286
Alignment:
Q  205 tgtgattacattaaattatgtcattttctcaaaattt 241  Q
    |||||||||||| |||||||||||| |||||||||||    
T  42192322 tgtgattacattgaattatgtcattgtctcaaaattt 42192286  T

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Target: scaffold0314 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 8999 - 8958
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  8999 acacttgtgattacgttgaattatgtcattttctcaaaattt 8958  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 18946042 - 18946083
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  18946042 acactcgtgattacattgaattatgtcattttctcaaaattt 18946083  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 24462280 - 24462319
Alignment:
Q  202 acttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  24462280 acttgtgattacattgaattatgtcattttttcaaaattt 24462319  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 24176871 - 24176829
Alignment:
Q  200 acacttgtgattacattaaattatgtca-ttttctcaaaattt 241  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  24176871 acacttgtgattacattaaatcatgtcatttttctcaaaattt 24176829  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 7888155 - 7888106
Alignment:
Q  191 ccgacacatacacttgtgattacattaaattatgtcattttctcaaaatt 240  Q
    |||||||  |||||||||||||||||||||||||  | ||||||||||||    
T  7888155 ccgacaccgacacttgtgattacattaaattatgcgagtttctcaaaatt 7888106  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 8203872 - 8203835
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaa 237  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  8203872 acacttgtgattacattcacttatgtcattttctcaaa 8203835  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 14332454 - 14332422
Alignment:
Q  205 tgtgattacattaaattatgtcattttctcaaa 237  Q
    |||||||||||| ||||||||||||||||||||    
T  14332454 tgtgattacattgaattatgtcattttctcaaa 14332422  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Original strand, 41017421 - 41017449
Alignment:
Q  209 attacattaaattatgtcattttctcaaa 237  Q
    |||||||||||||||||||||||||||||    
T  41017421 attacattaaattatgtcattttctcaaa 41017449  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 17568690 - 17568728
Alignment:
Q  199 tacacttgtgattacattaaattatgtcattttctcaaa 237  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  17568690 tacacttgtaattacattaaattatgtaattttctcaaa 17568728  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 14338495 - 14338532
Alignment:
Q  204 ttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  14338495 ttgtgattacattgaattatgtcattttttcaaaattt 14338532  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 19323448 - 19323493
Alignment:
Q  192 cgacacatacacttgtgattacattaaattatgtcattttctcaaa 237  Q
    |||||| ||||| |||||||| ||| ||||||||||||||||||||    
T  19323448 cgacacttacacatgtgattaaattcaattatgtcattttctcaaa 19323493  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 49179723 - 49179764
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||||||||||  |||||||||| |||||||||||||    
T  49179723 acacttgtgattacatcgaattatgtcactttctcaaaattt 49179764  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 1502648 - 1502592
Alignment:
Q  177 gacgtgtattgtgaccgacacatacacttgtgattacattaaattatgtcattttct 233  Q
    |||||||  |||| || ||||| |||| |||||||||||| ||||||||||||||||    
T  1502648 gacgtgttctgtgtccaacacagacacatgtgattacattcaattatgtcattttct 1502592  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 42667666 - 42667634
Alignment:
Q  205 tgtgattacattaaattatgtcattttctcaaa 237  Q
    |||||||| ||||||||||||||||||||||||    
T  42667666 tgtgattatattaaattatgtcattttctcaaa 42667634  T

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Target: scaffold0504 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 8705 - 8746
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||||| ||||||| ||| ||||||||||||||||||||    
T  8705 acacttgtggttacattgaatcatgtcattttctcaaaattt 8746  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 18116 - 18157
Alignment:
Q  200 acacttgtgattacattaaattatgtcattttctcaaaattt 241  Q
    ||||||| ||||||||| |||||||| |||||||||||||||    
T  18116 acacttgcgattacattgaattatgttattttctcaaaattt 18157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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