View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10066_low_10 (Length: 319)
Name: NF10066_low_10
Description: NF10066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10066_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 48633654 - 48633348
Alignment:
| Q |
1 |
gattgaaccctcaccttaaaattcaccttgaatttaaagatattaaacaactgattttatttt--agtttcataaattttgaagnnnnnnnnnn-ggttt |
97 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| |
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| T |
48633654 |
gattgaaccctcaccttaaaattcaccttaaatttaaagatattaaacaactgattctatttttaagtttcataaattttgaagtttttttttttggttt |
48633555 |
T |
|
| Q |
98 |
aatttatcaaaaatgttaaagatattgaattgnnnnnnnnattgattttgatggaggtattataattatatcttggtgaaaaaacatgattgactcnnnn |
197 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| |||| |
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| T |
48633554 |
aatttatcaaaactgttaaagatattgaattgttttttttattgattttgatggaggtattataaagatattttggtgaaaaaacatgattaactctttt |
48633455 |
T |
|
| Q |
198 |
nnnatcta-gggttagaaattcaccttttaaaggtgaataattaagtgccaagggtttaaactttgatccagctatcctaatgcattgtttctatcaaat |
296 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||||| |||||||| |
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| T |
48633454 |
tttatctaggggttagaaattcaccttttaaaggtgaataattaagtgtctagggtttaaactttgatccagctattataatgtattgtttttatcaaat |
48633355 |
T |
|
| Q |
297 |
gagttaa |
303 |
Q |
| |
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||||||| |
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|
| T |
48633354 |
gagttaa |
48633348 |
T |
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