View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10066_low_12 (Length: 267)

Name: NF10066_low_12
Description: NF10066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10066_low_12
NF10066_low_12
[»] chr3 (2 HSPs)
chr3 (1-101)||(42479830-42479930)
chr3 (172-251)||(42479616-42479695)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 42479930 - 42479830
Alignment:
Q  1 gtttggctactgttgctaagtatctggttaagaatgaagatggagtatccatttctgctcttaacctcatgaatcaggataaagttctcatggaaagctg 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42479930 gtttggctactgttgctaagtatttggttaagaatgaagatggtgtatccatttctgctcttaacctcatgaatcaggataaagttctcatggaaagctg 42479831  T
Q  101 g 101  Q
    |    
T  42479830 g 42479830  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 42479695 - 42479616
Alignment:
Q  172 attctaggacgaggagtgttaaaatctcactttagatttttgatatggggtaaatataaatgaacaaaatgggtgaatgg 251  Q
    ||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42479695 attctaggacgaggagtgttaaaatttacctttagatttttgatatggggtaaatataaatgaacaaaatgggtgaatgg 42479616  T

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