View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10066_low_13 (Length: 247)
Name: NF10066_low_13
Description: NF10066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10066_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 29115809 - 29116041
Alignment:
| Q |
2 |
gagagagatgaacgcgattctaattgcttctataattaacgagaaaagtgagagaattttaaactggagatttaggcatcatgaagtgaaaccaagtgta |
101 |
Q |
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| T |
29115809 |
gagagagatgaacgcgattctaattgcttctataattaacgagaaaagtgagagaattttaaactggagatttaggcagcatgaagtgaaaccaagtgta |
29115908 |
T |
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| Q |
102 |
taattaagttacggtttattaaactagaaatgatacacat---ggatggttttgtagaattaaaattgagtaacaagttatggtttattaaaatagaaca |
198 |
Q |
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| T |
29115909 |
tga--aagttacggtttattaaactagaaat-ataaacatgcaggatggttttgtagaattaaaattgagtaacaagttatggtttattaaaatagaaca |
29116005 |
T |
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| Q |
199 |
ggatttggaaccaaatgatctcatctaaattttata |
234 |
Q |
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| T |
29116006 |
ggatttggaaccaaatgatctcatctaagttttata |
29116041 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 13167675 - 13167588
Alignment:
| Q |
127 |
agaaatgatacacatggatggttttgtagaattaaaattgagtaacaagtta-tggtttattaaaatagaacaggatttggaaccaaa |
213 |
Q |
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| T |
13167675 |
agaaatgatagatatggatagttttgtagaactggaatagagtagcaagttactcgtttattaaaatagaataggatggggaaccaaa |
13167588 |
T |
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