View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10066_low_16 (Length: 239)

Name: NF10066_low_16
Description: NF10066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10066_low_16
NF10066_low_16
[»] chr6 (3 HSPs)
chr6 (1-166)||(20614715-20614872)
chr6 (168-224)||(20614908-20614964)
chr6 (41-140)||(15299930-15300027)
[»] chr3 (4 HSPs)
chr3 (6-138)||(13760096-13760226)
chr3 (88-146)||(8859740-8859798)
chr3 (41-146)||(11152125-11152228)
chr3 (51-122)||(11133578-11133647)
[»] chr5 (2 HSPs)
chr5 (49-146)||(1416734-1416829)
chr5 (95-146)||(29644762-29644813)
[»] chr2 (1 HSPs)
chr2 (53-128)||(18684523-18684596)
[»] chr7 (1 HSPs)
chr7 (49-142)||(36475990-36476080)
[»] chr8 (1 HSPs)
chr8 (88-128)||(41344324-41344364)
[»] chr1 (1 HSPs)
chr1 (41-128)||(45638118-45638203)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 20614715 - 20614872
Alignment:
Q  1 aatcggcgacaagcaaatgaggtagttattgcccttgctagggttgctacattattagttagtcccaccacttattctattgtccagctcgttgtattga 100  Q
    |||||||||||| |||||||||||| || ||||||||| |||||||| ||||||||||      ||||||||||||||||| | |  ||| |||||||||    
T  20614715 aatcggcgacaaacaaatgaggtagctaatgcccttgccagggttgcaacattattag------ccaccacttattctattatac--ctcattgtattga 20614806  T
Q  101 acatttgattattaattaaatgctataaacacgttttattcaaaaattacccgaaacctgtaacta 166  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  20614807 acatctgattattaattaaatgctataagcacgttttattcaaaaattaccctaaacctgtaacta 20614872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 20614908 - 20614964
Alignment:
Q  168 tagctacattatgaaatatctatattatacccttcatcccataagaatacgaatttt 224  Q
    |||||||||||||||||||||||||||||| |||||| | |||||||||||||||||    
T  20614908 tagctacattatgaaatatctatattatactcttcatactataagaatacgaatttt 20614964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 15300027 - 15299930
Alignment:
Q  41 gggttgctacattattagttagtcccaccacttattctattgtccagctcgttgtattgaacatttgattattaattaaatgctataaacacgttttatt 140  Q
    ||||||| |||||||||  || |||||| | ||||||||||||  | ||||||||||||||||||| ||||||||| ||||| ||||| || ||||||||    
T  15300027 gggttgccacattattatctaatcccactatttattctattgt--atctcgttgtattgaacatttaattattaatgaaatgttataagcatgttttatt 15299930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 138
Target Start/End: Complemental strand, 13760226 - 13760096
Alignment:
Q  6 gcgacaagcaaatgaggtagttattgcccttgctagggttgctacattattagttagtcccaccacttattctattgtccagctcgttgtattgaacatt 105  Q
    |||||||||||||||||||| |   | ||||||  ||| |||  ||||||||| |||||||||||||||||||||||| |  || ||||||||||||||     
T  13760226 gcgacaagcaaatgaggtagctcacgtccttgccggggctgccccattattagctagtcccaccacttattctattgtac--cttgttgtattgaacatc 13760129  T
Q  106 tgattattaattaaatgctataaacacgtttta 138  Q
    | ||||||||| ||||||||||||||| |||||    
T  13760128 ttattattaatgaaatgctataaacacatttta 13760096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 8859740 - 8859798
Alignment:
Q  88 ctcgttgtattgaacatttgattattaattaaatgctataaacacgttttattcaaaaa 146  Q
    |||||| |||||||||| ||||||||||| ||||||||||| ||  ||||||| |||||    
T  8859740 ctcgttatattgaacatctgattattaatgaaatgctataagcatcttttattaaaaaa 8859798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 11152228 - 11152125
Alignment:
Q  41 gggttgctacattattagttagtcccaccacttattctattgtccagctcgttgtattgaacatttgattattaattaaatgctataaacacgttttatt 140  Q
    ||||||| ||||||| || ||||||||| | |||||||  ||| |  || ||| |||||||||| ||||||||||| ||||||||||| ||  |||||||    
T  11152228 gggttgccacattatcagctagtcccactatttattcttatgtac--cttgttatattgaacatctgattattaatgaaatgctataagcatcttttatt 11152131  T
Q  141 caaaaa 146  Q
     |||||    
T  11152130 aaaaaa 11152125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 11133647 - 11133578
Alignment:
Q  51 attattagttagtcccaccacttattctattgtccagctcgttgtattgaacatttgattattaattaaatg 122  Q
    |||||||| ||||||||| |||||||||  ||| |  |||||||||| |||||| ||||||||||| |||||    
T  11133647 attattagctagtcccactacttattcttatgtac--ctcgttgtatagaacatatgattattaatgaaatg 11133578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 1416734 - 1416829
Alignment:
Q  49 acattattagttagtcccaccacttattctattgtccagctcgttgtattgaacatttgattattaattaaatgctataaacacgttttattcaaaaa 146  Q
    |||||||||| ||||||||  ||||||| |||||| |  ||| ||||||||||||||||||| ||||| ||||  |||||||||||||||||||||||    
T  1416734 acattattagctagtcccattacttattttattgtac--ctcattgtattgaacatttgatttttaataaaatattataaacacgttttattcaaaaa 1416829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 29644813 - 29644762
Alignment:
Q  95 tattgaacatttgattattaattaaatgctataaacacgttttattcaaaaa 146  Q
    |||||||||| ||||||||||| ||||||||||||||  ||||||| |||||    
T  29644813 tattgaacatctgattattaatgaaatgctataaacatcttttattaaaaaa 29644762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 18684596 - 18684523
Alignment:
Q  53 tattagttagtcccaccacttattctattgtccagctcgttgtattgaacatttgattattaattaaatgctataa 128  Q
    ||||||||||||||||||||||||||  ||| |  |||||||||||||| || ||||||||||| |||||||||||    
T  18684596 tattagttagtcccaccacttattcttatgtac--ctcgttgtattgaatatctgattattaatgaaatgctataa 18684523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 36475990 - 36476080
Alignment:
Q  49 acattattagttagtcccaccacttattctattgtccagctcgttgtattgaacatttgattattaattaaatgctataaacacgttttattca 142  Q
    |||||||||| |||| |||||||||||| |||| | |  || |||||||||||||| ||||||||||| ||||| ||||| |||||||||||||    
T  36475990 acattattagctagttccaccacttatt-tattatac--cttgttgtattgaacatctgattattaataaaatgatataagcacgttttattca 36476080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 41344324 - 41344364
Alignment:
Q  88 ctcgttgtattgaacatttgattattaattaaatgctataa 128  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  41344324 ctcgttgtattgaacatctgattattaatgaaatgctataa 41344364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 45638118 - 45638203
Alignment:
Q  41 gggttgctacattattagttagtcccaccacttattctattgtccagctcgttgtattgaacatttgattattaattaaatgctataa 128  Q
    ||||||| | |||||||| ||||||||  |||||||||  ||| |  ||||||||||||||||| ||||| ||||| ||||| |||||    
T  45638118 gggttgccatattattagctagtcccattacttattcttatgtac--ctcgttgtattgaacatctgatttttaatgaaatgttataa 45638203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University