View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10066_low_18 (Length: 220)
Name: NF10066_low_18
Description: NF10066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10066_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 7116224 - 7116411
Alignment:
| Q |
14 |
taggtctaattgggataaattgtggtttgaatgaaaatttgtaaagtccaccaaaattgagtgtgtgaattccaagattgtcatctttagatttgcaatg |
113 |
Q |
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| T |
7116224 |
taggtctaattgggataaattgtggtttgaatgaaaatttgtaaagtccaccaaaattgagtatgtgaattccaagattgtcatctttagatttgcaatg |
7116323 |
T |
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| Q |
114 |
aacattcaagcttgttggatttgttggatatggagcatataccttattgataatataaactgttaccttgtgacgacctatagctata |
201 |
Q |
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| T |
7116324 |
aacattcaagcttgttggatttgttggatatggagcatataccttattgataatataaactgttaccttgcgacgacctatagctata |
7116411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 7116751 - 7116806
Alignment:
| Q |
20 |
taattgggataaattgtggtttgaatgaaaatttgtaaagtccaccaaaattgagt |
75 |
Q |
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| T |
7116751 |
taattgggataaattctggtttgaatgaaaatatgtaaactccaccaaaattgagt |
7116806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 17373867 - 17373943
Alignment:
| Q |
36 |
tggtttgaatgaaaatttgtaaagtccaccaaaattgagtgtgtgaattccaagattgtcatctttagatttgcaat |
112 |
Q |
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| T |
17373867 |
tggtctgaatgaaaacctgtaaatttctccaaacatgagtgtatgaactccaagatcatcatctttagatttgcaat |
17373943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 10973427 - 10973385
Alignment:
| Q |
71 |
tgagtgtgtgaattccaagattgtcatctttagatttgcaatg |
113 |
Q |
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| T |
10973427 |
tgagtgtgtgaaatccaagatcgtcatctttagatttgcaatg |
10973385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 5922382 - 5922431
Alignment:
| Q |
70 |
ttgagtgtgtgaattccaagattgtcatctttagatttgcaatgaacatt |
119 |
Q |
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| T |
5922382 |
ttgattgtgtgaaatccaagatcatcatcttttgatttgcaatgaacatt |
5922431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 6613234 - 6613188
Alignment:
| Q |
71 |
tgagtgtgtgaattccaagattgtcatctttagatttgcaatgaaca |
117 |
Q |
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| T |
6613234 |
tgagtgtgtgatctccaagatcgtcatctttagatttgcaatgaaca |
6613188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 22823354 - 22823400
Alignment:
| Q |
71 |
tgagtgtgtgaattccaagattgtcatctttagatttgcaatgaaca |
117 |
Q |
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| T |
22823354 |
tgagtgtgtgatctccaagattgtcatctttagatttgcaacgaaca |
22823400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 32258442 - 32258485
Alignment:
| Q |
72 |
gagtgtgtgaattccaagattgtcatctttagatttgcaatgaa |
115 |
Q |
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| T |
32258442 |
gagtgtgtgaaatccaagatcttcatctttagatttgcaatgaa |
32258485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 9145989 - 9146033
Alignment:
| Q |
73 |
agtgtgtgaattccaagattgtcatctttagatttgcaatgaaca |
117 |
Q |
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| T |
9145989 |
agtgtatgaaatccaagatcgtcatcttgagatttgcaatgaaca |
9146033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 9180443 - 9180399
Alignment:
| Q |
73 |
agtgtgtgaattccaagattgtcatctttagatttgcaatgaaca |
117 |
Q |
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| T |
9180443 |
agtgtatgaaatccaagatcgtcatcttgagatttgcaatgaaca |
9180399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 596269 - 596345
Alignment:
| Q |
36 |
tggtttgaatgaaaatttgtaaagtccaccaaaattgagtgtgtgaattccaagattgtcatctttagatttgcaat |
112 |
Q |
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| T |
596269 |
tggtctgaatgaaaacctgtaaatttctccaaacatgagtgtgtgaactccaagatcatcatctttggatttgcaat |
596345 |
T |
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