View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10066_low_2 (Length: 403)
Name: NF10066_low_2
Description: NF10066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10066_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 6 - 387
Target Start/End: Original strand, 42971725 - 42972107
Alignment:
| Q |
6 |
agaagcaaaggcaccaaagacaaaggcaaagacactgaagtgctgcccgagaaaacgtagattcttgaacttattacaagaatagttttagtcgctctta |
105 |
Q |
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| T |
42971725 |
agaaacaaaggcaccaaagacaaaggcaaagacactgaagtgcggcccgagaaaacgtagattattgaacttattacaagaatagttttagtcgctatta |
42971824 |
T |
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| Q |
106 |
aagttgtttatgatcccttttgtaagagaaatcccacnnnnnnnnaactaaaa-aataatatttttagtgaacttatttcctggctgagtcagacagttg |
204 |
Q |
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| T |
42971825 |
aagttgtttatgatcccttttgcaagagaaatcccacttttttttaactaaaaaaataatatttttagtgaacttatttactggctgagtcagacagttg |
42971924 |
T |
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| Q |
205 |
tagttgtagtgcttacgggtgttctgttaattatccatatcctattctcaacactcctttggttgtgctgtttcctgtctgaaactcttgctatagaaat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42971925 |
tagttgtagtgcttacgggtgttctgttaattatccatatcctattctcaacactcctttggttgtgctgtttcctgtctgaaactcttgctatagaaat |
42972024 |
T |
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| Q |
305 |
tcaggcatatagcagtgtagattgaaggagtatgtccctatcccagaaggcactgtcactgtgttgtagctcacttaaactat |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42972025 |
tcaggcatatagcagtgtagattgaaggagtatgtccctatcccagaaggcactgtcactgtgttgtagctcacttaaactat |
42972107 |
T |
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