View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10066_low_3 (Length: 379)

Name: NF10066_low_3
Description: NF10066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10066_low_3
NF10066_low_3
[»] chr5 (3 HSPs)
chr5 (7-372)||(4733809-4734173)
chr5 (11-136)||(1575747-1575871)
chr5 (11-136)||(1608944-1609068)
[»] chr7 (1 HSPs)
chr7 (292-341)||(318962-319011)


Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 7 - 372
Target Start/End: Complemental strand, 4734173 - 4733809
Alignment:
Q  7 attttcatgcttatagatccttgcatgtacttttgggccgcatctcccttctgaagaagttcatgcaagattcccataaactgaacctcttttttagaag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4734173 attttcatgcttatagatccttgcatgtacttttgggccgcatctcccttctgaagaagttcatgcaagattcccataaactgaacctcttttttagaag 4734074  T
Q  107 aaaactgcagaaatataagtcaaattagaaatatagactaaaaatataatattgcaaaggataatagagaatattgaactatttattttgttatggtaaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4734073 aaaactgcagaaatataagtcaaattagaaatatagactaaaaataaaatactgcaaaggataatagagaatattgaactatttatttt-ttatggtaaa 4733975  T
Q  207 ttgtacatttttcaaatttgaagatagagaaatagacatggcaacggggcgggtttaagtatctccgcttccctgcccccgtcatcaaaccatattgaga 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||     
T  4733974 ttgtacatttttcaaatttgaagatagagaaatagacatggcaacgaggcgggtttaagtatccccgcttccttgcccccgtcatcaaaccatattgagg 4733875  T
Q  307 gtaaaaattaaacatccaactccgcccccaatgggattggtcttttggccccgcccccaccaccat 372  Q
    |||||||| ||| || ||||||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  4733874 gtaaaaatcaaatattcaactccgcccccaatgggatcggtctttcggccccgcccccacctccat 4733809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 1575747 - 1575871
Alignment:
Q  11 tcatgcttatagatccttgcatgtacttttgggccgcatctcccttctgaagaagttcatgcaagattcccataaactgaacct-cttttttagaagaaa 109  Q
    |||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| ||  ||||||||||| || ||| ||||||||    
T  1575747 tcatgcttctagatccttgcatgtacttttgtgctgcatctcccttctgaagaagttcatgcaatatt-ccggaaactgaacctcctctttcagaagaaa 1575845  T
Q  110 actgcagaaatataagtcaaattagaa 136  Q
    ||||||| |||||||||||||||||||    
T  1575846 actgcag-aatataagtcaaattagaa 1575871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 1609068 - 1608944
Alignment:
Q  11 tcatgcttatagatccttgcatgtacttttgggccgcatctcccttctgaagaagttcatgcaagattcccataaactgaacct-cttttttagaagaaa 109  Q
    |||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| ||  ||||||||||| || ||| ||||||||    
T  1609068 tcatgcttctagatccttgcatgtacttttgtgctgcatctcccttctgaagaagttcatgcaatatt-ccggaaactgaacctcctctttcagaagaaa 1608970  T
Q  110 actgcagaaatataagtcaaattagaa 136  Q
    ||||||| |||||||||||||||||||    
T  1608969 actgcag-aatataagtcaaattagaa 1608944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 318962 - 319011
Alignment:
Q  292 caaaccatattgagagtaaaaattaaacatccaactccgcccccaatggg 341  Q
    ||||| |||||| | ||||||||| |||| ||||||||||||||||||||    
T  318962 caaactatattgggggtaaaaattgaacacccaactccgcccccaatggg 319011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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