View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10066_low_4 (Length: 371)

Name: NF10066_low_4
Description: NF10066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10066_low_4
NF10066_low_4
[»] chr7 (2 HSPs)
chr7 (7-361)||(240210-240564)
chr7 (322-361)||(4587679-4587718)
[»] chr6 (3 HSPs)
chr6 (317-360)||(3634199-3634242)
chr6 (315-360)||(17352547-17352592)
chr6 (317-360)||(22259516-22259559)
[»] chr8 (2 HSPs)
chr8 (318-360)||(33053638-33053680)
chr8 (319-348)||(13109637-13109666)
[»] chr2 (4 HSPs)
chr2 (319-360)||(35406132-35406173)
chr2 (322-360)||(20515848-20515886)
chr2 (319-361)||(31000194-31000236)
chr2 (322-360)||(31483239-31483277)
[»] scaffold0211 (1 HSPs)
scaffold0211 (318-360)||(24760-24802)
[»] chr4 (3 HSPs)
chr4 (318-356)||(21823393-21823431)
chr4 (318-365)||(42454551-42454598)
chr4 (318-360)||(41635687-41635729)
[»] scaffold0003 (1 HSPs)
scaffold0003 (322-361)||(89531-89570)
[»] chr3 (2 HSPs)
chr3 (318-361)||(1085483-1085526)
chr3 (319-348)||(17132472-17132501)
[»] chr5 (2 HSPs)
chr5 (322-360)||(24308816-24308854)
chr5 (322-360)||(24364471-24364509)
[»] chr1 (1 HSPs)
chr1 (319-360)||(24115511-24115552)


Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 240210 - 240564
Alignment:
Q  7 gttgtttcgtgagcactactatggccacgatatcttctactttaatttcatttagttgtagttacatgcatgcatgtgctagtgattatgtctttaagct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  240210 gttgtttcgtgagcactactatggccacgatatcttctactttaatttcatttagttgtagctacatgcatgcatgtgctagtgattatgtctttaagct 240309  T
Q  107 ttcaccatttatcaatcttgcattgtaaatcttgccatccatgaattaatgatgtttcaccctttcttttcaattcataacataaattaatagaatagtt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  240310 ttcaccatttatcaatcttgcattgtaaatcttgccatccatgaattaatgatgtttcaccctttcttttcaattcataacataaattaatagaatagtt 240409  T
Q  207 agattttcctttttatgttacttaggctgatnnnnnnnnctaattaatgatacacaccatcttcctcactttcttaatgcctcagagtgatttctcttga 306  Q
    |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  240410 agattttcctttttatgttacttaggctgataaaaaaaactaattaatgatacacaccatcttcctcactttcttaatgcctcagagtgatttctcttga 240509  T
Q  307 atctaccaaatatttaaaactagtcttattgtttaccaaaaataccggtaaacac 361  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  240510 atttaccaaatatttaaaactagtcttattgtttaccaaaaataccggtaaacac 240564  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 4587718 - 4587679
Alignment:
Q  322 aaaactagtcttattgtttaccaaaaataccggtaaacac 361  Q
    |||||||||| |||||||||||||||| ||||||||||||    
T  4587718 aaaactagtcatattgtttaccaaaaacaccggtaaacac 4587679  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 317 - 360
Target Start/End: Complemental strand, 3634242 - 3634199
Alignment:
Q  317 tatttaaaactagtcttattgtttaccaaaaataccggtaaaca 360  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  3634242 tatttaaaactagtcttattgtttaccaaaaacaccggtaaaca 3634199  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 360
Target Start/End: Complemental strand, 17352592 - 17352547
Alignment:
Q  315 aatatttaaaactagtcttattgtttaccaaaaataccggtaaaca 360  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||||    
T  17352592 aataattaaaactagtcctattgtttaccaaaaatacaggtaaaca 17352547  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 360
Target Start/End: Original strand, 22259516 - 22259559
Alignment:
Q  317 tatttaaaactagtcttattgtttaccaaaaataccggtaaaca 360  Q
    |||||||||||||||||||||||||| ||||| | |||||||||    
T  22259516 tatttaaaactagtcttattgtttacaaaaaacagcggtaaaca 22259559  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 33053680 - 33053638
Alignment:
Q  318 atttaaaactagtcttattgtttaccaaaaataccggtaaaca 360  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  33053680 atttaaaactagtcttattgtttaccaaaaacaccggtaaaca 33053638  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Complemental strand, 13109666 - 13109637
Alignment:
Q  319 tttaaaactagtcttattgtttaccaaaaa 348  Q
    ||||||||||||||||||||||||||||||    
T  13109666 tttaaaactagtcttattgtttaccaaaaa 13109637  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 360
Target Start/End: Original strand, 35406132 - 35406173
Alignment:
Q  319 tttaaaactagtcttattgtttaccaaaaataccggtaaaca 360  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  35406132 tttaaaactagtcttattgtttaccaaaaaaaccggtaaaca 35406173  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 20515848 - 20515886
Alignment:
Q  322 aaaactagtcttattgtttaccaaaaataccggtaaaca 360  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  20515848 aaaactagtcttattgtttaccaaaaacaccggtaaaca 20515886  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 31000194 - 31000236
Alignment:
Q  319 tttaaaactagtcttattgtttaccaaaaataccggtaaacac 361  Q
    |||||||||| ||||||||||||||||||| || |||||||||    
T  31000194 tttaaaactaatcttattgtttaccaaaaacacaggtaaacac 31000236  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 31483277 - 31483239
Alignment:
Q  322 aaaactagtcttattgtttaccaaaaataccggtaaaca 360  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  31483277 aaaactagtcttcttgtttaccaaaaataccggcaaaca 31483239  T

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Target: scaffold0211 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 24802 - 24760
Alignment:
Q  318 atttaaaactagtcttattgtttaccaaaaataccggtaaaca 360  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  24802 atttaaaactagtcttattgtttatcaaaaatatcggtaaaca 24760  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 356
Target Start/End: Complemental strand, 21823431 - 21823393
Alignment:
Q  318 atttaaaactagtcttattgtttaccaaaaataccggta 356  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  21823431 atttaaaactagtcttattgtttaccaaaaacaccggta 21823393  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 365
Target Start/End: Complemental strand, 42454598 - 42454551
Alignment:
Q  318 atttaaaactagtcttattgtttaccaaaaataccggtaaacaccaaa 365  Q
    ||||||||||| ||||||||||||||| ||| ||||||||||| ||||    
T  42454598 atttaaaactaatcttattgtttaccacaaacaccggtaaacatcaaa 42454551  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 41635687 - 41635729
Alignment:
Q  318 atttaaaactagtcttattgtttaccaaaaataccggtaaaca 360  Q
    |||||||||||||||||| |||| ||||||| |||||||||||    
T  41635687 atttaaaactagtcttatggttttccaaaaacaccggtaaaca 41635729  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 89570 - 89531
Alignment:
Q  322 aaaactagtcttattgtttaccaaaaataccggtaaacac 361  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  89570 aaaactagtcttattgtttactaaaaacaccggtaaacac 89531  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 1085526 - 1085483
Alignment:
Q  318 atttaaaactagtcttattgtttaccaaaaataccggtaaacac 361  Q
    |||||||| |||| ||||||||||||||||| ||||||||||||    
T  1085526 atttaaaattagttttattgtttaccaaaaacaccggtaaacac 1085483  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Complemental strand, 17132501 - 17132472
Alignment:
Q  319 tttaaaactagtcttattgtttaccaaaaa 348  Q
    ||||||||||||||||||||||||||||||    
T  17132501 tttaaaactagtcttattgtttaccaaaaa 17132472  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 24308854 - 24308816
Alignment:
Q  322 aaaactagtcttattgtttaccaaaaataccggtaaaca 360  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  24308854 aaaactagttttcttgtttaccaaaaataccggtaaaca 24308816  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 24364471 - 24364509
Alignment:
Q  322 aaaactagtcttattgtttaccaaaaataccggtaaaca 360  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  24364471 aaaactagttttcttgtttaccaaaaataccggtaaaca 24364509  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 360
Target Start/End: Original strand, 24115511 - 24115552
Alignment:
Q  319 tttaaaactagtcttattgtttaccaaaaataccggtaaaca 360  Q
    |||||||||||| ||||||||||||||||| |||| ||||||    
T  24115511 tttaaaactagttttattgtttaccaaaaacaccgataaaca 24115552  T

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