View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10066_low_5 (Length: 357)
Name: NF10066_low_5
Description: NF10066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10066_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 7008785 - 7009128
Alignment:
| Q |
1 |
cataatatttttcttctgccattctcaatcaagtcactgcaaattataaatcataattttgaaattgtacaaatataagcacaattggattagaccaagt |
100 |
Q |
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| T |
7008785 |
cataatatttttcttctgccattctcaatcaagtcactgcaaattataaatcataattttgaaattgtacaaatttaagcacaattggattagaccaagt |
7008884 |
T |
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| Q |
101 |
gtagagctaccaagtacataattttttcagaatttccaaaatccaaaggtatatagacaagaatcttaatatcaacatgattcacttgattattttttgc |
200 |
Q |
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| T |
7008885 |
gtagagctaccaagtacataattttttcagaatttccaaaatccaaaggtatatagacaagaatcttaatatcaacatgattcacttgattattttttgc |
7008984 |
T |
|
| Q |
201 |
cagtaacttgctgtatatagtcatggatttcccattggtaaattacatttaaccgttatgaggtatgattaattataggtaaccttatagattgcatcaa |
300 |
Q |
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| T |
7008985 |
tagtaacttgctgtatatagtcatggatttcccattggtaaattacatttaaccgttatgaggtatgattaattataggtaaccttatagattgcatcaa |
7009084 |
T |
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| Q |
301 |
tatttagagtggaccctttagataggtacttttgtgaacaaggt |
344 |
Q |
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| T |
7009085 |
tatttagagtggaccctttagataggtacttttgtgaacaaggt |
7009128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 227 - 344
Target Start/End: Original strand, 7011320 - 7011434
Alignment:
| Q |
227 |
atttcccattggtaaattacatttaaccgttatgaggtatgattaattataggtaaccttatagattgcatcaatatttagagtggaccctttagatagg |
326 |
Q |
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| T |
7011320 |
atttcccattgataaagt-catttagccgttctgaggtatgactaatgataggtaatcttttagattgcattaacttt--gaggggaccctttagatagg |
7011416 |
T |
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| Q |
327 |
tacttttgtgaacaaggt |
344 |
Q |
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| T |
7011417 |
tacttttgtgaacaaggt |
7011434 |
T |
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