View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10066_low_7 (Length: 335)

Name: NF10066_low_7
Description: NF10066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10066_low_7
NF10066_low_7
[»] chr8 (3 HSPs)
chr8 (1-204)||(9891554-9891757)
chr8 (200-317)||(9891792-9891899)
chr8 (10-92)||(17220198-17220280)
[»] chr4 (11 HSPs)
chr4 (1-182)||(3671048-3671229)
chr4 (12-175)||(52982885-52983048)
chr4 (10-149)||(54860810-54860949)
chr4 (10-164)||(55657369-55657523)
chr4 (10-175)||(55619009-55619173)
chr4 (10-175)||(55626313-55626477)
chr4 (229-317)||(3670894-3670982)
chr4 (10-156)||(54630369-54630515)
chr4 (10-166)||(55637265-55637421)
chr4 (11-143)||(55663621-55663753)
chr4 (52-163)||(50189997-50190108)
[»] chr2 (1 HSPs)
chr2 (10-192)||(13403672-13403854)
[»] chr1 (1 HSPs)
chr1 (56-181)||(37308569-37308694)
[»] chr7 (1 HSPs)
chr7 (56-141)||(46153223-46153308)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 9891554 - 9891757
Alignment:
Q  1 cggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatt 100  Q
    ||||||||  ||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9891554 cggttacacaggagatgtcaacttgtatgctctgatgatagaggacgctgagggattggaaaagattgaaaacttgcagagtcatgacaactatgaaatt 9891653  T
Q  101 tgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggttctcaacctggttttaactttagaa 200  Q
    | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||     
T  9891654 tatgggaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgccatctccaggcaatggttctcaacctggttttaactttagag 9891753  T
Q  201 gcag 204  Q
    ||||    
T  9891754 gcag 9891757  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 9891792 - 9891899
Alignment:
Q  200 agcagaatgtgaccattgttgcaaggaaccaaggaaccatgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttat 299  Q
    |||||||||||||||||||||||||||||          |||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  9891792 agcagaatgtgaccattgttgcaaggaacg---------tgacgagtggtttctttgatgc-agcttggattctatcctttattaagttgtagtttttat 9891881  T
Q  300 tggtaactagtgtgtaag 317  Q
    ||||||||||||||||||    
T  9891882 tggtaactagtgtgtaag 9891899  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 17220198 - 17220280
Alignment:
Q  10 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaact 92  Q
    |||||||||||||| ||||||||  |||||||| || || | |||||||||||||||||| ||| |||||| |||||||||||    
T  17220198 gggagatgtcaacttgtatgctcaaatgatagaagatgctgagggattggaaaagattgataacatgcagaatcatgacaact 17220280  T

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Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 3671229 - 3671048
Alignment:
Q  1 cggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatt 100  Q
    |||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  3671229 cggttacacgggagatgtcaacttgtatgctctgatgataggggacgcggagggattggaaaagattggaaacttgcagagtcatgacaactatgaaatt 3671130  T
Q  101 tgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggttctcaac 182  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671129 tatgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggttctcaac 3671048  T

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Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 52983048 - 52982885
Alignment:
Q  12 gagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggc 111  Q
    |||||||||| | |||||||| |||||||||||| || | ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||| ||    
T  52983048 gagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaatttatgagaatgc 52982949  T
Q  112 tgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 175  Q
    ||| | |||||| ||||||||||||||||||||||||| |||||| ||||||||| || |||||    
T  52982948 tgttagaattctcgagacatattggttggaagatgaagatgagacactacctccaagccatggt 52982885  T

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Target: chr4; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 54860949 - 54860810
Alignment:
Q  10 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 109  Q
    |||||||||||||| |||||||| |||||||||||| || | |||||||||||||||||| ||| |||||| ||||||||||| |||||||| |||||||    
T  54860949 gggagatgtcaacttgtatgctcagatgatagaggatgctgagggattggaaaagattgataacatgcagaatcatgacaactatgaaatttatgagaag 54860850  T
Q  110 gctgtcaaaattcttgagacatattggttggaagatgaag 149  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  54860849 gctgttaaaattcttgagacatattggttggaagatgaag 54860810  T

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Target: chr4; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 55657523 - 55657369
Alignment:
Q  10 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 109  Q
    |||||||||||||| |||||||| ||||||||| || |  | ||||||||||||||| ||||||||||||||||||||||||  |||||||| |||||||    
T  55657523 gggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaaagatcgaaaacttgcagagtcatgacaacaatgaaatttatgagaag 55657424  T
Q  110 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctc 164  Q
    ||||| |||||||||||||||||||||||||||||||  | |||||| |||||||    
T  55657423 gctgttaaaattcttgagacatattggttggaagatgttgatgagacactacctc 55657369  T

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Target: chr4; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 55619173 - 55619009
Alignment:
Q  10 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 109  Q
    |||||||||||||| |||||||| ||||||||| || || | |||||||||||| || ||||||||||||||||||||||||   ||||||| |||||||    
T  55619173 gggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaaa-atcgaaaacttgcagagtcatgacaacaaagaaatttatgagaag 55619075  T
Q  110 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 175  Q
    ||||| |||||||| |||||||||||||||||||||| || |||||| ||||||| |||| |||||    
T  55619074 gctgttaaaattctcgagacatattggttggaagatgtagatgagacactacctctaggccatggt 55619009  T

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Target: chr4; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 55626477 - 55626313
Alignment:
Q  10 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 109  Q
    |||||||||||||| |||||||| ||||||||| || || | |||||||||||| || ||||||||||||||||||||||||   ||||||| |||||||    
T  55626477 gggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaaa-atcgaaaacttgcagagtcatgacaacaaagaaatttatgagaag 55626379  T
Q  110 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 175  Q
    ||||| |||||||| |||||||||||||||||||||| || |||||| ||||||| |||| |||||    
T  55626378 gctgttaaaattctcgagacatattggttggaagatgtagatgagacactacctctaggccatggt 55626313  T

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Target: chr4; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 229 - 317
Target Start/End: Complemental strand, 3670982 - 3670894
Alignment:
Q  229 caaggaaccatgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttattggtaactagtgtgtaag 317  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  3670982 caaggaactgtgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttattgacaactagtgtgtaag 3670894  T

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Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 54630369 - 54630515
Alignment:
Q  10 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 109  Q
    |||||||||||| | |||||||| |||||||||||| |    ||||||||||||||||||||||||| | ||||||||  || | ||||||| |||||||    
T  54630369 gggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaaagattgaaaacttggatagtcatgaagacagagaaatttatgagaag 54630468  T
Q  110 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagac 156  Q
    ||||  |||||||| |||| |||||||||||||||||||| ||||||    
T  54630469 gctgctaaaattctcgagagatattggttggaagatgaagatgagac 54630515  T

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Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 55637265 - 55637421
Alignment:
Q  10 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 109  Q
    |||||||||||||| ||||| || |||||||   ||||| |  || | || | |||||||||||||||||||||||||||||  ||||||| ||||||||    
T  55637265 gggagatgtcaacttgtatgttcagatgatacctgacgctgacggttgggtagagattgaaaacttgcagagtcatgacaacaatgaaattcgtgagaag 55637364  T
Q  110 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctcca 166  Q
    ||||| ||||||||||| |||||||||||  |||||||||  |||||  ||||||||    
T  55637365 gctgttaaaattcttgaaacatattggtttaaagatgaagacgagacagtacctcca 55637421  T

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Target: chr4; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 55663753 - 55663621
Alignment:
Q  11 ggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaagg 110  Q
    ||||||||||||| |||||||| ||||||||| || |  | |||||||||||||||||||||||||||||||||  || ||  |||||||| ||||||||    
T  55663753 ggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaaagattgaaaacttgcagagtcacaaccacattgaaatttatgagaagg 55663654  T
Q  111 ctgtcaaaattcttgagacatattggttggaag 143  Q
    |||| | |||  | |||||||||||||||||||    
T  55663653 ctgttagaatcgtcgagacatattggttggaag 55663621  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 163
Target Start/End: Complemental strand, 50190108 - 50189997
Alignment:
Q  52 gggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggt 151  Q
    |||||| || ||||| |||||| |||| |||||||| |||   ||||| | |||||||||||| ||||||||||| |||||||||| | | ||||||| |    
T  50190108 gggatttgacaagatagaaaacctgcaaagtcatgataaccaagaaatatatgagaaggctgttaaaattcttgaaacatattggtcgaacgatgaagat 50190009  T
Q  152 gagacgctacct 163  Q
    |||| |||||||    
T  50190008 gagatgctacct 50189997  T

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Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 13403672 - 13403854
Alignment:
Q  10 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 109  Q
    |||||||||||||| |||||||| ||||||||| || |||| |||||||||||||||||| ||| |||||||||||||||||  ||||||||  ||||||    
T  13403672 gggagatgtcaacttgtatgctcagatgatagatgaggcggagggattggaaaagattgagaacctgcagagtcatgacaacaatgaaatttacgagaag 13403771  T
Q  110 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggttctcaacctggttttaa 192  Q
    ||||| |||||||| |||||||||||||||||||||||||  ||||| ||||| |||||| ||||||||||||||||||||||    
T  13403772 gctgttaaaattctcgagacatattggttggaagatgaagacgagacactaccaccaggcgatggttctcaacctggttttaa 13403854  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 37308694 - 37308569
Alignment:
Q  56 ttggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgaga 155  Q
    ||||| || ||||| ||| | |||||||||||||||   || |||| ||| |||||||| || |||||||||||||| |||||||| || |||| |||||    
T  37308694 ttggagaaaattgagaacctccagagtcatgacaacacagagatttatgaaaaggctgtgaagattcttgagacatactggttggaggaagaagatgaga 37308595  T
Q  156 cgctacctccaggcaatggttctcaa 181  Q
    |  | ||||||||| ||| |||||||    
T  37308594 ccatgcctccaggcgatgcttctcaa 37308569  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 46153308 - 46153223
Alignment:
Q  56 ttggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttgga 141  Q
    ||||| || ||||| ||| | |||||||||||||||  ||| |||| ||| |||||||| || ||||| |||||||| ||||||||    
T  46153308 ttggagaaaattgagaacctccagagtcatgacaacaatgagatttatgaaaaggctgtgaagattctcgagacatactggttgga 46153223  T

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