View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10066_low_8 (Length: 327)
Name: NF10066_low_8
Description: NF10066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10066_low_8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 4 - 327
Target Start/End: Original strand, 51767070 - 51767393
Alignment:
| Q |
4 |
ggaggagcacagacattgtatcttaagagatggagcacccatgttcttggagaagggaatcacaaaatcatttccatgtgcatccacatcattctacatt |
103 |
Q |
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| T |
51767070 |
ggaggaccacaaacattgtatcttaagagatggagcacccatgttcttggagaagggaatcacaaaatcatttccatgtgcatccacatcattctacatt |
51767169 |
T |
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| Q |
104 |
gactattgtattttccaaatggaccatgtttttagagggaggccatgcatacaagttatgtatcataaagttagctttctgacagggctatggtaataag |
203 |
Q |
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| T |
51767170 |
gactattgtattttccaaatggaccatgtttttagagggaggccatgcatacaagttatgtatcataaagttagctttctgacagggctatggtaataag |
51767269 |
T |
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| Q |
204 |
gatacagttattgaacgtgaaattgtgtttggcagaagctagaaatggatcagaaattaaaatctggcctgaggccagctattgactttgtgcattgacg |
303 |
Q |
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| T |
51767270 |
gatacagttattgaacgtgaaattgtgtttggcagaagctagaaatggatcagaaattaaaatctggcctgaggccagctattgactttgtgcattgacg |
51767369 |
T |
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| Q |
304 |
actgacctatgtagcacggacact |
327 |
Q |
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| T |
51767370 |
actgacctatgtagcacggacact |
51767393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 320
Target Start/End: Original strand, 51755530 - 51755647
Alignment:
| Q |
210 |
gttattgaacgtgaaattgtgtttggcagaagctagaaatggatcagaaattaaaatc-------tggcctgaggccagctattgactttgtgcattgac |
302 |
Q |
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| T |
51755530 |
gttatggaacgtgaaattgtgtttggcagaaactagaaatgggtcagaaactaaaatctggcagttggcctaaggctggctattgacattgtgtgttgac |
51755629 |
T |
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| Q |
303 |
gactgacctatgtagcac |
320 |
Q |
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| T |
51755630 |
ggctgacctatgtagcac |
51755647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 51755411 - 51755455
Alignment:
| Q |
109 |
ttgtattttccaaatggaccatgtttttagagggaggccatgcat |
153 |
Q |
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| T |
51755411 |
ttgtattttccaaatggaccttgttttcaaagggaggccttgcat |
51755455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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