View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10067_high_2 (Length: 420)
Name: NF10067_high_2
Description: NF10067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10067_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 3531449 - 3531837
Alignment:
| Q |
19 |
caccacaggtgcagaaatctcaggacaaccgggagtgaactatggacaactaggaaacaaccttccaacaccaacaacctcagtgtctctcatcaaaaac |
118 |
Q |
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| T |
3531449 |
caccacaggtgcagaaatctcaggacaaccgggagtgaactatggacaactaggaaacaaccttccaacaccaacaacctcagtgtctctcatcaaaaac |
3531548 |
T |
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| Q |
119 |
ctcaaagccaagcgtgtcaaaatctatgacgcaaatccacaaatcctcaaagccctcgaaaacactggaatccaagtatccatcatgctccccaatgaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3531549 |
ctcaaagccaagcgtgtcaaaatctatgacgcaaatccacaaatcctcaaagccctcgaaaacactggaatccaagtatccatcatgctccccaatgaac |
3531648 |
T |
|
| Q |
219 |
ttgtaacaaatgtatcctcaaaccaaacacttgcaaatcaatgggtccaaactaacctcgtacccttctactcaaaaacactcattcgttatcttcttgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3531649 |
ttgtaacaaatgtatcctcaaaccaaacacttgcaaatcaatgggtccaaactaacctcgtacccttctactcaaaaacactcattcgttatcttcttgt |
3531748 |
T |
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| Q |
319 |
tggtaatgaactcatttcctcaacaacaaaccaaacatggccccacattgtacctgccatgtacagaatgaaacactccttaactatct |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3531749 |
tggtaatgaactcatttcctcaacaacaaaccaaacatggccccacattgtacctgccatgtacagaatgaaacactccttaactatct |
3531837 |
T |
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