View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10067_low_1 (Length: 917)
Name: NF10067_low_1
Description: NF10067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10067_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 795; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 795; E-Value: 0
Query Start/End: Original strand, 9 - 807
Target Start/End: Original strand, 45595276 - 45596074
Alignment:
| Q |
9 |
agaagcaaaggcaaacattagggataatgaattacaaaattaattcatctgcttaggagagaaagagaggctcacctatctggagaaatggttcttcctc |
108 |
Q |
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| T |
45595276 |
agaagcaaaggcaaacattagggataatgaattacaaaattaattcatctgcttaggagagaaagagaggctcacctatctggagaaatggttcttcctc |
45595375 |
T |
|
| Q |
109 |
tcccaagaaaacgacgatggccttcaaccgctcgcgccatgttgccagggtaagaatgtacaaatacatcactttcaacagatacaatatagtcaagagc |
208 |
Q |
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| T |
45595376 |
tcccaagaaaacgacgatggccttcaaccgctcgcgccatgttgccagggtaagaatgtacaaatacatcactttcaacagatacaatatagtcaagagc |
45595475 |
T |
|
| Q |
209 |
agccatttgcgacgcatgattagaaaatggttcaagctcttcaatagatgccaacttttcctgatattagttacatgtagattaaataagaaaccagttc |
308 |
Q |
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| T |
45595476 |
agccatttgcgacgcatgattagaaaatggttcaagctcttcaatagatgccaacttttcctgatattagttacatgtagattaaataagaaaccagttc |
45595575 |
T |
|
| Q |
309 |
aaacaatgctttatcaatcttcattcaccaagaaacaacaataaagtcttgtaatttctaaccttgctcattaaaaagggatagcgtgatcgcaattcag |
408 |
Q |
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| T |
45595576 |
aaacaatgctttatcaatcttcattcaccaagaaacaacaataaagtcttgtaatttctaaccttgctcattaaaaagggatagcgtgatcgcaattcag |
45595675 |
T |
|
| Q |
409 |
tcatatgggattcacccccatatatctcccctgcagcaatatatattggagtctttgcagggtatccaagagcactaaggaaaattccaacttcctttgg |
508 |
Q |
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| T |
45595676 |
tcatatgggattcacccccatatatctcccctgcagcaatatatattggagtctttgcagggtatccaagagcactaaggaaaattccaacttcctttgg |
45595775 |
T |
|
| Q |
509 |
agttaagggacaataccctttggccctctcttcttttggattgatgtgctttcttttccaataagtagtattctctctgtaagtttggttcatgttagtc |
608 |
Q |
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| T |
45595776 |
agttaagggacaataccctttggccctctcttcttttggatcgatgtgctttcttttccaataagtagtattctctctgtaagtttggttcatgttagtc |
45595875 |
T |
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| Q |
609 |
atttcaaacatcaggaagaaaaattaaactgaaaatttgacagaattttgaagcatcattacctgataatccgtagttccttggcctcagaagttgataa |
708 |
Q |
| |
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| T |
45595876 |
atttcaaacatcaggaagaaaaattaaactgaaaatttgacagaattttgaagcatcattacctgataatccgtagttccttggcctcagaagttgataa |
45595975 |
T |
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| Q |
709 |
atcatgcgtgcagccgctgaatgcaagcatatccttctcatagcgcaagtgtaatgtgatataaggaccatatgatctcatcctctccaccaatatctg |
807 |
Q |
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| T |
45595976 |
atcatgcgtgcagccgctgaatgcaagcatatccttctcatagcgcaagtgtaatgtgatataaggaccatatgatctcatcctctccaccaatatctg |
45596074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 369 - 542
Target Start/End: Original strand, 27151335 - 27151508
Alignment:
| Q |
369 |
accttgctcattaaaaagggatagcgtgatcgcaattcagtcatatgggattcacccccatatatctcccctgcagcaatatatattggagtctttgcag |
468 |
Q |
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| T |
27151335 |
accttgctcattaacaatggataacgggatcgcagttcagccatatgggactcacccccataaatctctccagcagcaatatatatcggcgtctttgatg |
27151434 |
T |
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| Q |
469 |
ggtatccaagagcactaaggaaaattccaacttcctttggagttaagggacaataccctttggccctctcttct |
542 |
Q |
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| T |
27151435 |
gatatccaagagcagtaagaaaaattccaacttcctttggtgttaaggggcaaaaccctttggacctctgttct |
27151508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 111 - 277
Target Start/End: Original strand, 27148951 - 27149117
Alignment:
| Q |
111 |
ccaagaaaacgacgatggccttcaaccgctcgcgccatgttgccagggtaagaatgtacaaatacatcactttcaacagatacaatatagtcaagagcag |
210 |
Q |
| |
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||||||||||| ||||| |||||||| || | |||||||| |||| ||||| ||| |||||||||||| || | ||||||||||||||||||||||| |
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| T |
27148951 |
ccaagaaaacggcgatgaccttcaacagcccttgccatgtttccagaataagagggtataaatacatcactctcgatagatacaatatagtcaagagcag |
27149050 |
T |
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| Q |
211 |
ccatttgcgacgcatgattagaaaatggttcaagctcttcaatagatgccaacttttcctgatatta |
277 |
Q |
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| T |
27149051 |
ccatttgagaagcatgattaaaaaagggttcaagctcctcaatggatgccaacgtttcctgaaatta |
27149117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 704 - 750
Target Start/End: Original strand, 27151677 - 27151723
Alignment:
| Q |
704 |
gataaatcatgcgtgcagccgctgaatgcaagcatatccttctcata |
750 |
Q |
| |
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| T |
27151677 |
gataaatcatgcgtacacccactaaatgcaagcatatccttctcata |
27151723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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