View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10067_low_2 (Length: 712)

Name: NF10067_low_2
Description: NF10067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10067_low_2
NF10067_low_2
[»] chr1 (1 HSPs)
chr1 (18-696)||(40504709-40505386)
[»] chr7 (1 HSPs)
chr7 (42-119)||(9556947-9557021)


Alignment Details
Target: chr1 (Bit Score: 655; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 18 - 696
Target Start/End: Complemental strand, 40505386 - 40504709
Alignment:
Q  18 catgcaatacaacaggtaagatcctttattttaaggcataaaactagagacattgaaaaagtacacaaaatctgataataataaaacaactttagatttc 117  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40505386 catgcaatacaacaggtaggatcctttattttaaggcataaaactagagacattgaaaaagtacacaaaatctgataataataaaacaactttagatttc 40505287  T
Q  118 atcaaagaaatagtacaagcagccaatgaagtacctaaagcactttccaaaagaattgaaagaatgaaatttcaacaagttcaattacttacaaaactct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40505286 atcaaagaaatagtacaagcagccaatgaagtacctaaagcactttccaaa-gaattgaaagaatgaaatttcaacaagttcaattacttacaaaactct 40505188  T
Q  218 atcaatatagtcacaatacagaaatataaacactattacctcaaattaaacaaatgagtatgaacaaaattctccatctagccacaataaggacacacca 317  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40505187 atcaatatagtcacaatacagaagtataaacactattacctcaaattaaacaaatgagtatgaacaaaattctccatctagccacaataaggacacacca 40505088  T
Q  318 tcaatccattctcattacacaacaaacactcatcaatcttttccttttctgccaaaatcttatggctaccattacacttaaaacacatcacaaaccttaa 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40505087 tcaatccattctcattacacaacaaacactcatcaatcttttccttttctgccataatcttatggctaccattacacttaaaacacatcacaaaccttaa 40504988  T
Q  418 accaccacaagcatcacaaggtccattggaacaatctattggaaccccttcaagaattttcttcaactttccttgttcatgcaaactcaaaacttcttcc 517  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40504987 accaccacaagcatcacaaggtccattggaacaatcaattggaaccccttcaagaattttcttcaactttccttgttcatgcaaactcaaaacttcttcc 40504888  T
Q  518 gttgcacctatataccttcccttaacaaaaagccttggaggcacaactttctcacccaaaagactccacaattcatccttatactccttgtgcattgata 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40504887 gttgcacctatataccttcccttaacaaaaagccttggaggcacaactttctcacccaaaagactccacaattcatccttatactccttgtgcattgata 40504788  T
Q  618 tatccctctcaagatacaaaaccttgaaactttgtaaaagaaaccgaattttttggcagtcttcgaaagtctttctgat 696  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40504787 tatccctctcaagatacaaaaccttgaaactttgtaaaagaaaccgaattttttggcagtcttcgaaagtctttctgat 40504709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 9556947 - 9557021
Alignment:
Q  42 tttattttaaggcataaaactagagacattgaaaaagtacacaaaatctgataataataaaacaactttagatttcat 119  Q
    |||||||||||| || ||||||||||||||||||||| ||| |||||| |   ||| | |||||||||||||||||||    
T  9556947 tttattttaaggtatgaaactagagacattgaaaaagcacaaaaaatcgg---atattgaaacaactttagatttcat 9557021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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