View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10067_low_7 (Length: 270)
Name: NF10067_low_7
Description: NF10067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10067_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6626493 - 6626728
Alignment:
| Q |
1 |
ggtgcagaccagaattgatttgcttttggtgacacataataatatggcacaaaatcatcttgtttggtgtcatatgggctgattgtgggactggtaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6626493 |
ggtgcagaccagaattgatttgcttttggtgacacataataatatggcacaaaatcatcttgtttggtgtcatatgggctgattgtgggactggtaaagg |
6626592 |
T |
|
| Q |
101 |
gagtatttgaagtactagtactccttggagggacacttatccggaagttatttcctcgaaagcctggagctgcatccccacttgtatcttgacgcacact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6626593 |
gagtatttgaagtactagtactccttggagggacacttatccggaagttattccctcgaaagcctggagctgcatccccacttgtatcttgacgcacact |
6626692 |
T |
|
| Q |
201 |
cctactcccaggtggccttgtctccgcattctctgc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
6626693 |
cctactcccaggtggccttgtctccgcattctctgc |
6626728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University