View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10068_high_2 (Length: 396)

Name: NF10068_high_2
Description: NF10068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10068_high_2
NF10068_high_2
[»] chr1 (10 HSPs)
chr1 (139-377)||(33150577-33150815)
chr1 (139-361)||(13868135-13868357)
chr1 (208-385)||(52028258-52028435)
chr1 (139-361)||(45795029-45795251)
chr1 (139-382)||(26510677-26510917)
chr1 (144-387)||(5808334-5808571)
chr1 (137-216)||(1248904-1248983)
chr1 (139-352)||(49458337-49458550)
chr1 (265-356)||(5287602-5287693)
chr1 (269-348)||(3545551-3545630)
[»] chr2 (10 HSPs)
chr2 (139-385)||(11195925-11196171)
chr2 (139-385)||(32623934-32624179)
chr2 (139-378)||(144344-144583)
chr2 (179-348)||(17689609-17689778)
chr2 (287-381)||(6822992-6823086)
chr2 (180-261)||(11579901-11579982)
chr2 (158-382)||(7300255-7300478)
chr2 (163-250)||(18634674-18634761)
chr2 (182-246)||(40110063-40110127)
chr2 (180-259)||(12562722-12562801)
[»] chr4 (12 HSPs)
chr4 (139-385)||(20543659-20543905)
chr4 (139-361)||(43517050-43517272)
chr4 (139-361)||(27299764-27299985)
chr4 (266-369)||(41879487-41879590)
chr4 (180-369)||(19119667-19119856)
chr4 (265-356)||(52814090-52814181)
chr4 (277-361)||(42272537-42272621)
chr4 (312-350)||(48029259-48029297)
chr4 (313-355)||(53569613-53569655)
chr4 (266-354)||(32348755-32348843)
chr4 (277-357)||(40483765-40483845)
chr4 (299-351)||(55261598-55261650)
[»] chr5 (12 HSPs)
chr5 (139-385)||(5099957-5100203)
chr5 (139-357)||(21368238-21368454)
chr5 (139-378)||(979407-979646)
chr5 (137-261)||(34369574-34369698)
chr5 (167-354)||(379518-379705)
chr5 (179-348)||(475824-475993)
chr5 (290-381)||(14055110-14055201)
chr5 (315-381)||(18718444-18718510)
chr5 (182-255)||(17431216-17431289)
chr5 (337-385)||(35101080-35101128)
chr5 (290-349)||(24177223-24177282)
chr5 (269-354)||(5909513-5909598)
[»] chr7 (9 HSPs)
chr7 (139-378)||(26855294-26855533)
chr7 (1-136)||(26878154-26878289)
chr7 (139-361)||(35213231-35213453)
chr7 (182-361)||(38488841-38489020)
chr7 (299-382)||(4106880-4106963)
chr7 (287-355)||(27724572-27724640)
chr7 (314-361)||(36031679-36031726)
chr7 (164-222)||(27724449-27724507)
chr7 (173-222)||(28327093-28327142)
[»] chr3 (14 HSPs)
chr3 (142-361)||(40514029-40514248)
chr3 (139-385)||(34828993-34829239)
chr3 (158-359)||(20857556-20857757)
chr3 (158-246)||(20857941-20858029)
chr3 (179-352)||(35216261-35216434)
chr3 (140-352)||(31921671-31921883)
chr3 (287-355)||(46249325-46249393)
chr3 (140-219)||(14307012-14307091)
chr3 (179-345)||(11237420-11237586)
chr3 (140-349)||(31674540-31674749)
chr3 (173-222)||(46249211-46249260)
chr3 (182-255)||(53941023-53941096)
chr3 (290-357)||(14306874-14306941)
chr3 (316-369)||(4963954-4964007)
[»] chr6 (7 HSPs)
chr6 (139-385)||(14687328-14687573)
chr6 (210-361)||(14320512-14320663)
chr6 (170-246)||(2710065-2710141)
chr6 (311-369)||(33095561-33095619)
chr6 (179-348)||(2364716-2364885)
chr6 (179-344)||(22532132-22532297)
chr6 (182-255)||(25349927-25350000)
[»] chr8 (9 HSPs)
chr8 (139-387)||(9510368-9510616)
chr8 (139-387)||(6244721-6244969)
chr8 (139-382)||(25900612-25900854)
chr8 (179-352)||(6985098-6985271)
chr8 (154-226)||(26658707-26658779)
chr8 (277-355)||(9492283-9492360)
chr8 (142-211)||(3938963-3939032)
chr8 (182-255)||(25192793-25192866)
chr8 (180-261)||(42579806-42579887)
[»] scaffold0048 (1 HSPs)
scaffold0048 (277-355)||(50912-50990)
[»] scaffold0246 (1 HSPs)
scaffold0246 (277-357)||(21704-21784)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 139 - 377
Target Start/End: Complemental strand, 33150815 - 33150577
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33150815 tacaggtcactcaaaagctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagactctataataac 33150716  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  33150715 atccaaaccaccgttgaacaactagcagataaagtaagatttcactctttatggtggcttaaagctaacaaagtcaattttatgtacggtactcaaagat 33150616  T
Q  339 ggtggtcggaccctttattatgtctaggtattgatcgac 377  Q
    |||||||||| |||||||||||||| ||||| |||||||    
T  33150615 ggtggtcggaacctttattatgtctgggtatcgatcgac 33150577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 139 - 361
Target Start/End: Original strand, 13868135 - 13868357
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    ||||||||||||   ||| |||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||     
T  13868135 tacaggtcactcccgggcccgtcaatccttcctacaacttatttggttactatgtgtttggttggtttggaatgaacgtaataatagactttataataat 13868234  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    |||||||| ||| | ||||||||||   | ||||| | || ||||||||| |||||| | |||||||| || |||||||||||||||||||| |||||||    
T  13868235 atccaaacaaccatggaacaactagtaaaaaaagttaaatatcactctttgtggtggctaaaagctaataaggccaattttatgtacggtacacaaagat 13868334  T
Q  339 ggtggtcggaccctttattatgt 361  Q
    |||||||||||||||||||||||    
T  13868335 ggtggtcggaccctttattatgt 13868357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 208 - 385
Target Start/End: Complemental strand, 52028435 - 52028258
Alignment:
Q  208 gaatgaacgtaataatagattctataataacatccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaac 307  Q
    ||||||||||||||||||| | | |||||| ||||||||||| ||||||| |||||| ||||||||  ||||||| |||||||||||| || ||||||||    
T  52028435 gaatgaacgtaataatagactttttaataatatccaaaccacagttgaactactagcagataaagttcgatttcattctttatggtggcttcaagctaac 52028336  T
Q  308 aaagccaattttatgtacggtactcaaagatggtggtcggaccctttattatgtctaggtattgatcgacctttgctt 385  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||| | ||| | |||||||||||||||    
T  52028335 aaagcaaatttcatgtatggtactcaaagatggtggtcggaccctttattttgtttgggtttagatcgacctttgctt 52028258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 139 - 361
Target Start/End: Complemental strand, 45795251 - 45795029
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    |||||||||||||  ||| |||||||| ||  | ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| | ||||||||     
T  45795251 tacaggtcactcacgggcccgtcaatccttcgtacaacttatttggttactatgtgtttggttggtttggaatgtacgtaataatagactttataataat 45795152  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    ||| |||| ||| | ||| | ||||  || ||||| | || ||||||||| |||||| | || | ||| || |||||||||||||||||||| |||| ||    
T  45795151 atcaaaacaaccatggaagagctagtagaaaaagttaaatatcactctttgtggtggctaaaggttaataaggccaattttatgtacggtacacaaaaat 45795052  T
Q  339 ggtggtcggaccctttattatgt 361  Q
    |||||||||||||||||||||||    
T  45795051 ggtggtcggaccctttattatgt 45795029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 139 - 382
Target Start/End: Original strand, 26510677 - 26510917
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    |||||||||||| |||||||||||||  || || |||||||| |||||||||||||  ||||| || |||||||||||||| || ||| |  |||||||     
T  26510677 tacaggtcactcgaaggctcgtcaattctt-cttcaacttatatggttactttgtgcctggtttgtgtggaatgaacgtaacaacagacttcataataat 26510775  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    |||||||||| | ||||||||||||  || ||||||| ||||||||| || |||| | |||||||||| || |||| ||||||||||||| |||||||||    
T  26510776 atccaaaccaacattgaacaactagtagaaaaagtaaaatttcactccttttggtagcttaaagctaataaggccacttttatgtacggttctcaaagat 26510875  T
Q  339 ggtggtcggaccctttattatgtctaggtattgatcgacctttg 382  Q
      |||||||||| |||||||||| | ||||| |||  |||||||    
T  26510876 --tggtcggaccatttattatgtttgggtatcgattcacctttg 26510917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 144 - 387
Target Start/End: Complemental strand, 5808571 - 5808334
Alignment:
Q  144 gtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatcca 243  Q
    |||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||| |||||||| || | |||  |||| || |||||    
T  5808571 gtcactcaaaggctcgtcaatccttccttcaacttatttggttactttgtgtctggttggtttggaacgaacgtaacaacaaatttcataacaatatcca 5808472  T
Q  244 aaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtgg 343  Q
    ||||||| | ||||| ||||| || |||||||  ||||||||||| | |||| |||||||||| || | || |||| || ||||||| ||      | ||    
T  5808471 aaccaccatcgaacagctagcagaaaaagtaaagtttcactctttttagtggcttaaagctaataaggtcacttttgtgcacggtacaca------gagg 5808378  T
Q  344 tcggaccctttattatgtctaggtattgatcgacctttgcttct 387  Q
    ||| |||||||||||||| | ||||| ||| | |||||||||||    
T  5808377 tcgaaccctttattatgtttgggtatcgattgtcctttgcttct 5808334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 1248904 - 1248983
Alignment:
Q  137 tatacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacg 216  Q
    |||||||||||||| |||||  ||| ||| ||||| ||||||||||||||||||||||| ||| || |||||||||||||    
T  1248904 tatacaggtcactcgaaggcgtgtcgatcctttcttcaacttatttggttactttgtgtgtggatgatttggaatgaacg 1248983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 352
Target Start/End: Complemental strand, 49458550 - 49458337
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    |||||||||||| ||||| |||  ||| ||||| |||||||||||||| |||||||| ||| ||||||| |||||||| || ||  || | | ||||||     
T  49458550 tacaggtcactcgaaggcacgtagatcctttcttcaacttatttggttgctttgtgtgtggatggtttgaaatgaacgcaacaaatgactttttaataat 49458451  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    ||||||||   | |||||    || | || ||||||| |||  | |||||||||||| | |||||||  |||||||  ||| ||||||||  |||||| |    
T  49458450 atccaaacattcattgaaggtttatcagaaaaagtaaaattatattctttatggtggctaaaagctagtaaagccacatttgtgtacggttatcaaaggt 49458351  T
Q  339 ggtggtcggaccct 352  Q
    ||||||||||||||    
T  49458350 ggtggtcggaccct 49458337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 5287693 - 5287602
Alignment:
Q  265 cgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggaccctttat 356  Q
    ||||||||||| |||||| || || |||||| ||||||| ||||||  || |||| |||||||| ||||||| ||||||||| |||||||||    
T  5287693 cgataaagtaaaatttcattcgttgtggtggcttaaagccaacaaaatcacttttgtgtacggttctcaaagttggtggtcgaaccctttat 5287602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 3545551 - 3545630
Alignment:
Q  269 aaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcgga 348  Q
    ||||||| ||| ||||||||||||||| | |||||||  |||||||  ||||| || ||| ||||||| |||||||||||    
T  3545551 aaagtaaaattacactctttatggtggctaaaagctagtaaagccacatttatataaggttctcaaaggtggtggtcgga 3545630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 7e-99; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 139 - 385
Target Start/End: Complemental strand, 11196171 - 11195925
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||   | |||||||||    
T  11196171 tacaggtcactcaaaggctcgtcaataatttctccaacttatttggttactttttatttggttggtttggaatgaacgtaataatatgctttataataac 11196072  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||    
T  11196071 atccaaaccaccgttgaacaactagcagataaagtaaaatttcactctttatggtggcttaaagctaacaaagtcaattttatgttcggtactcaaagat 11195972  T
Q  339 ggtggtcggaccctttattatgtctaggtattgatcgacctttgctt 385  Q
    |||||||||||||||||||||||||  |||| ||| |||||||||||    
T  11195971 ggtggtcggaccctttattatgtctgagtatcgattgacctttgctt 11195925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 139 - 385
Target Start/End: Complemental strand, 32624179 - 32623934
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | | ||||||     
T  32624179 tacaggtcactcaaaggctcgtcagtcatttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataat 32624080  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    ||||||||||| |||||||||||||| ||||||||   |||||| ||||||| |||| || ||||||||||||| ||||||||||| ||||| |||| ||    
T  32624079 atccaaaccacggttgaacaactagcagataaagttcaatttcattctttatagtggcttcaagctaacaaagcaaattttatgtatggtacccaaa-at 32623981  T
Q  339 ggtggtcggaccctttattatgtctaggtattgatcgacctttgctt 385  Q
    ||||||||||||||||||| ||| | ||| | |||||||||||||||    
T  32623980 ggtggtcggaccctttattttgtttgggtttagatcgacctttgctt 32623934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 139 - 378
Target Start/End: Original strand, 144344 - 144583
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||  | | ||||||     
T  144344 tacaagtcactcaaaggctcgtcagtcatttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaataataggctttttaataat 144443  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    ||||||||||| |||||  | ||||| ||||||||  |||| || |||||||||||| || |||||||||| || ||||| ||||| ||||| ||| |||    
T  144444 atccaaaccacagttgacaatctagcagataaagttcgattccattctttatggtggcttcaagctaacaacgcaaatttcatgtatggtacccaacgat 144543  T
Q  339 ggtggtcggaccctttattatgtctaggtattgatcgacc 378  Q
    ||||||||||||||||||| ||| | ||| | ||||||||    
T  144544 ggtggtcggaccctttattttgtttgggtttagatcgacc 144583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 348
Target Start/End: Complemental strand, 17689778 - 17689609
Alignment:
Q  179 atttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttgaacaactagccgataaagtaagat 278  Q
    ||||||||||||||||| ||| |||||||||||||||| || || ||| | | |||||| | ||||||  || |||||    || | || ||||||| ||    
T  17689778 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaat 17689679  T
Q  279 ttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcgga 348  Q
    | ||||||||||||||| | |||||||  |||||||  ||| |||||||| ||||||| |||||||||||    
T  17689678 tacactctttatggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcgga 17689609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 6823086 - 6822992
Alignment:
Q  287 ttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggaccctttattatgtctaggtattgatcgaccttt 381  Q
    ||||||||||| |||||||| ||  |||||||| |||||||| ||||||||||||||||| |||||||| | ||| | ||||| ||| |||||||    
T  6823086 ttatggtggttaaaagctaataacaccaattttgtgtacggttctcaaagatggtggtcgaaccctttactttgtttgggtatcgattgaccttt 6822992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 11579901 - 11579982
Alignment:
Q  180 tttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttgaacaact 261  Q
    |||| ||||||||||| ||| |||||| ||||||||||||| ||||| | | ||||||||||||||||||| | ||||||||    
T  11579901 tttgtttactttgtgtctgggtggtttagaatgaacgtaatgatagaatatttaataacatccaaaccaccatagaacaact 11579982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 382
Target Start/End: Complemental strand, 7300478 - 7300255
Alignment:
Q  158 cgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttgaac 257  Q
    |||| ||| ||||| || ||||||||| |||||||||| ||| |||||||||||||| | || ||  || | | |||||||||||||||| || ||||||    
T  7300478 cgtcgatcttttcttcagcttatttggctactttgtgtctggatggtttggaatgaatgcaacaacggactatttaataacatccaaacccccattgaac 7300379  T
Q  258 aactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggaccctttatt 357  Q
    ||||    || || || | ||||||||| || | |||| ||||||| ||  | ||||  ||| ||| ||||  |||||||||||||||||||||||| ||    
T  7300378 aactcatagaaaaggttaaatttcactcgttttagtggcttaaagccaa-tatgccacgtttgtgtgcggttgtcaaagatggtggtcggaccctttgtt 7300280  T
Q  358 atgtctaggtattgatcgacctttg 382  Q
    |||| | ||||| ||  ||||||||    
T  7300279 atgtttgggtatcgactgacctttg 7300255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 18634761 - 18634674
Alignment:
Q  163 atcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccacc 250  Q
    ||||||||| || || |||| |||||||||| | ||  |||||||||||||||||||||| | | | | |||||||||||||||||||    
T  18634761 atcatttcttcagctcatttcgttactttgtttctgtatggtttggaatgaacgtaataacaaaatatttaataacatccaaaccacc 18634674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 40110127 - 40110063
Alignment:
Q  182 tggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaac 246  Q
    |||||||||||||| ||| | ||||||||||||||||| |||||| | | |||||| ||||||||    
T  40110127 tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaataatatccaaac 40110063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 12562801 - 12562722
Alignment:
Q  180 tttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttgaacaa 259  Q
    |||||||||||||||||||| |||||||||| || ||||||||   | | | |||||| |||||||||||| | ||||||    
T  12562801 tttggttactttgtgtttgggtggtttggaaagagcgtaataactaaatatttaataatatccaaaccaccatagaacaa 12562722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 139 - 385
Target Start/End: Complemental strand, 20543905 - 20543659
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | ||||||     
T  20543905 tacaggtcactcaaaggctcgtcagccatttcttcaacttatttggttactttgtgtttgggtggtttggaatgaacgtaataatagactttttaataat 20543806  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    ||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  20543805 atccaaaccacggttgaacaactagcagataaagttagatttcattctttatggtggcttaaagctaacaaagccaattttatgtatggtacccaaagat 20543706  T
Q  339 ggtggtcggaccctttattatgtctaggtattgatcgacctttgctt 385  Q
    ||||||||||||||||||||||||| ||| | |||||||||||||||    
T  20543705 ggtggtcggaccctttattatgtctgggtttagatcgacctttgctt 20543659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 139 - 361
Target Start/End: Original strand, 43517050 - 43517272
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    |||||||||||||| |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||     
T  43517050 tacaggtcactcaagggctcgtcaatccttccttcaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagactttataataat 43517149  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    |||||||| ||| | ||||  ||||  || ||||| | || ||||||||| |||||| | || ||||| || |||||||| ||||||||||| |||||||    
T  43517150 atccaaacaaccatggaacggctagtagaaaaagttaaatatcactctttgtggtggctaaaggctaataaggccaatttgatgtacggtacacaaagat 43517249  T
Q  339 ggtggtcggaccctttattatgt 361  Q
    |||||||  ||||||||||||||    
T  43517250 ggtggtcataccctttattatgt 43517272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 139 - 361
Target Start/End: Complemental strand, 27299985 - 27299764
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    ||||||||||| ||||||||||||||| || || |||||||||||||| |||||||| |||||||||||||| ||| |||| || | |||  |||| ||     
T  27299985 tacaggtcacttaaaggctcgtcaatccttccttcaacttatttggtt-ctttgtgtctggttggtttggaacgaatgtaacaacatatttcataacaat 27299887  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    |||||||||||| ||||||| |  || || |||||||  ||||||||||| |||||| |||||||||| ||  ||| |||| || |||||||||| ||||    
T  27299886 atccaaaccaccattgaacagccggcagaaaaagtaaagtttcactctttttggtggcttaaagctaataagaccacttttgtgcacggtactcacagat 27299787  T
Q  339 ggtggtcggaccctttattatgt 361  Q
    |||||| ||||||||||||||||    
T  27299786 ggtggttggaccctttattatgt 27299764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 369
Target Start/End: Original strand, 41879487 - 41879590
Alignment:
Q  266 gataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggaccctttattatgtctag 365  Q
    |||||||| | ||||||||| || ||||| || |||||||| ||| ||| ||||||||||||| ||||||  ||||||||| |||||||| | |||||||    
T  41879487 gataaagttaaatttcactcgttgtggtgattaaaagctaataaaaccacttttatgtacggttctcaaaactggtggtcgaaccctttactttgtctag 41879586  T
Q  366 gtat 369  Q
    ||||    
T  41879587 gtat 41879590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 369
Target Start/End: Complemental strand, 19119856 - 19119667
Alignment:
Q  180 tttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttgaacaactagccgataaagtaagatt 279  Q
    |||||||||||||||| ||| |||||||||||||||||||||| | | | | |||||| |||||| ||||| | ||||||||     | ||||| | |||    
T  19119856 tttggttactttgtgtctggatggtttggaatgaacgtaataacaaaatatttaataatatccaagccaccatagaacaactcttataaaaagttaaatt 19119757  T
Q  280 tcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggaccctttattatgtctaggtat 369  Q
    ||| || ||||||||| |||||||||| || | ||| ||| || |||  ||| | || |||||||| |||| ||| |||||||| |||||    
T  19119756 tcattcgttatggtggcttaaagctaataatgtcaagtttgtgcacgacacttagagttggtggtcagaccttttgttatgtctgggtat 19119667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 52814181 - 52814090
Alignment:
Q  265 cgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggaccctttat 356  Q
    ||||||||||| |||||| || || |||||| ||||||| ||||||  || |||| |||||||| ||||||| ||||||||| |||||||||    
T  52814181 cgataaagtaaaatttcattcgttgtggtggcttaaagccaacaaaatcacttttgtgtacggttctcaaagttggtggtcgaaccctttat 52814090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 361
Target Start/End: Complemental strand, 42272621 - 42272537
Alignment:
Q  277 atttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggaccctttattatgt 361  Q
    |||||| |||||||||||| |||| ||||| || ||||  ||| || |||||| ||| ||||||||||||||||| ||| |||||    
T  42272621 atttcattctttatggtggcttaaggctaaaaatgccacatttgtgaacggtattcagagatggtggtcggaccccttagtatgt 42272537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 48029297 - 48029259
Alignment:
Q  312 ccaattttatgtacggtactcaaagatggtggtcggacc 350  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  48029297 ccaattttgtgtacggttctcaaagatggtggtcggacc 48029259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 53569655 - 53569613
Alignment:
Q  313 caattttatgtacggtactcaaagatggtggtcggacccttta 355  Q
    ||||||| |||||||| |||| |||||||||||||||||||||    
T  53569655 caattttgtgtacggttctcagagatggtggtcggacccttta 53569613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 354
Target Start/End: Original strand, 32348755 - 32348843
Alignment:
Q  266 gataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggacccttt 354  Q
    |||||||||| ||||||||| |  |||||| | |||||||| |  ||||  ||| |||||||| |||| |||||||||||||| |||||    
T  32348755 gataaagtaaaatttcactcgtattggtggctgaaagctaagaccgccatgtttgtgtacggttctcagagatggtggtcggatccttt 32348843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 357
Target Start/End: Complemental strand, 40483845 - 40483765
Alignment:
Q  277 atttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggaccctttatt 357  Q
    |||||| ||| |||||||| |||||| ||| || ||||  ||| || ||||| |||| ||||||||||||||||| |||||    
T  40483845 atttcattctatatggtggcttaaagttaataatgccacgtttgtgcacggttctcagagatggtggtcggaccccttatt 40483765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 55261650 - 55261598
Alignment:
Q  299 aaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggaccc 351  Q
    |||||||||||||||| |||| |||| ||| |||| |||||||||| ||||||    
T  55261650 aaagctaacaaagccacttttgtgtatggttctcagagatggtggttggaccc 55261598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 139 - 385
Target Start/End: Original strand, 5099957 - 5100203
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||  | | ||||||     
T  5099957 tacaggtcactcaaaggctcgtcagtcatttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaataataggctttttaataat 5100056  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    ||||||||||| |||||  | ||||| ||||||||  ||||||| |||||||||||| || ||||||| ||||||||||| ||||| ||||| ||| |||    
T  5100057 atccaaaccacagttgacaatctagcagataaagttcgatttcattctttatggtggcttcaagctaataaagccaatttcatgtatggtacccaacgat 5100156  T
Q  339 ggtggtcggaccctttattatgtctaggtattgatcgacctttgctt 385  Q
    ||||||||||||||||||| ||| | ||| | |||||||| ||||||    
T  5100157 ggtggtcggaccctttattttgtttgggtctagatcgaccattgctt 5100203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 139 - 357
Target Start/End: Original strand, 21368238 - 21368454
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    |||||||||||||||||||||||| ||||| || |||||||||||||||||  |||||||| |||||||||| ||||||||||||||| | | ||||||     
T  21368238 tacaggtcactcaaaggctcgtcagtcattccttcaacttatttggttact--gtgtttgggtggtttggaacgaacgtaataatagactttttaataat 21368335  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    ||||||||||| |||||||||||||| ||||||||  ||||||| |||||||||||| || ||||||||||||| || || ||||| ||||| |||||||    
T  21368336 atccaaaccacagttgaacaactagcagataaagttcgatttcattctttatggtggcttcaagctaacaaagcaaaattcatgtatggtacccaaagat 21368435  T
Q  339 ggtggtcggaccctttatt 357  Q
    |||||||||| ||||||||    
T  21368436 ggtggtcggatcctttatt 21368454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 139 - 378
Target Start/End: Original strand, 979407 - 979646
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    |||||||||||||| |||||| |||||||| || |||||||||| ||||||||| |||||| || ||||||||||||||||||||||| | ||||||||     
T  979407 tacaggtcactcaagggctcgacaatcattccttcaacttatttagttactttgcgtttggctgatttggaatgaacgtaataatagactttataataat 979506  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    || ||||| ||| | ||||| | ||  || ||| | | || ||||||||| | |||| | || ||||| ||  ||||||||||||||||||| |||||||    
T  979507 attcaaacaaccatggaacagcaagtagaaaaatttaaatatcactctttgtagtggctaaaggctaataagcccaattttatgtacggtacacaaagat 979606  T
Q  339 ggtggtcggaccctttattatgtctaggtattgatcgacc 378  Q
    |||||||||| |||||||||||| | ||||| || |||||    
T  979607 ggtggtcggatcctttattatgtttgggtatcgaccgacc 979646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 137 - 261
Target Start/End: Original strand, 34369574 - 34369698
Alignment:
Q  137 tatacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataata 236  Q
    |||||||||||||| ||||| ||   ||| || ||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| ||||| | ||  |    
T  34369574 tatacaggtcactctaaggcacgaagatccttcctccagcttatttgattactttgtgtttggttcgtttggaatgaacggaataacagattatttagga 34369673  T
Q  237 acatccaaaccaccgttgaacaact 261  Q
    ||||||||||| ||||||| |||||    
T  34369674 acatccaaacctccgttgatcaact 34369698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 354
Target Start/End: Complemental strand, 379705 - 379518
Alignment:
Q  167 tttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttgaacaactagccg 266  Q
    |||||||| || |||||||||||| |||| ||| |||| |||||||  ||||| |||||| | | |||||| | |||||||||||| || |||||    |    
T  379705 tttctccagctcatttggttacttggtgtctggatggtctggaatgctcgtaacaatagaatatttaataatacccaaaccaccgtagaccaacttttag 379606  T
Q  267 ataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggacccttt 354  Q
    | ||||| | |||||| || ||||||||| |||| ||||| || || |||||| |||||| |||||| || |||||||||||||||||    
T  379605 agaaagttaaatttcattcgttatggtggcttaaggctaagaacgctaattttgtgtacgatactcagagttggtggtcggacccttt 379518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 348
Target Start/End: Complemental strand, 475993 - 475824
Alignment:
Q  179 atttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttgaacaactagccgataaagtaagat 278  Q
    ||||||||||||||||| ||| |||||||||||||||| || || ||| | | |||||| | ||||||  || |||||    || | || ||||||| ||    
T  475993 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagaaaaagtaaaat 475894  T
Q  279 ttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcgga 348  Q
    | ||||||||||||||| | |||||||  |||||||  ||| |||||||| ||||||| |||||||||||    
T  475893 tacactctttatggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcgga 475824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 381
Target Start/End: Original strand, 14055110 - 14055201
Alignment:
Q  290 tggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggaccctttattatgtctaggtattgatcgaccttt 381  Q
    |||||||| |||| ||| ||  |||||||| |||| ||| |||||||||||||| ||||||||||||| ||| | ||||||||| |||||||    
T  14055110 tggtggttgaaagataataacaccaattttgtgtatggttctcaaagatggtggccggaccctttattttgtttgggtattgattgaccttt 14055201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 18718444 - 18718510
Alignment:
Q  315 attttatgtacggtactcaaagatggtggtcggaccctttattatgtctaggtattgatcgaccttt 381  Q
    |||||||||||||| || |||||||||||||||| |||||||||||| | ||||| ||| |||||||    
T  18718444 attttatgtacggttcttaaagatggtggtcggatcctttattatgtttgggtatcgattgaccttt 18718510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 17431289 - 17431216
Alignment:
Q  182 tggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttga 255  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||| | | |||||| ||| |||| ||| ||||    
T  17431289 tggttactttgtgtctggttagtttggaatgaacgtaacaatagaatatttaataatatcaaaactaccattga 17431216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 35101128 - 35101080
Alignment:
Q  337 atggtggtcggaccctttattatgtctaggtattgatcgacctttgctt 385  Q
    |||||||||||||||||||||||||||  ||||  ||||||||||||||    
T  35101128 atggtggtcggaccctttattatgtctgagtatcaatcgacctttgctt 35101080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 24177282 - 24177223
Alignment:
Q  290 tggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggac 349  Q
    |||||| | |||||||||||||||| ||||||||| ||| |||| |||||||||| ||||    
T  24177282 tggtggctgaaagctaacaaagccacttttatgtatggttctcagagatggtggttggac 24177223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 354
Target Start/End: Original strand, 5909513 - 5909598
Alignment:
Q  269 aaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggacccttt 354  Q
    ||||||| ||||||||| |  |||||| | ||||| || || |||| |||| |||||| | |||| ||||||||||||||||||||    
T  5909513 aaagtaaaatttcactcgtattggtggctgaaagcaaataacgccacttttgtgtacgattctcagagatggtggtcggacccttt 5909598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 139 - 378
Target Start/End: Complemental strand, 26855533 - 26855294
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||  | | ||||||     
T  26855533 tacaggtcactcaaaggctcgtcagtcatttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaataataggctttttaataat 26855434  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    ||||||||||| |||||  | ||||| ||||||||  ||||||| |||||||||||| || |||||||||| || ||||| ||||| ||||| ||| |||    
T  26855433 atccaaaccacagttgacaatctagcagataaagttcgatttcattctttatggtggcttcaagctaacaacgcaaatttcatgtatggtacccaacgat 26855334  T
Q  339 ggtggtcggaccctttattatgtctaggtattgatcgacc 378  Q
    ||||||||||||||||||| ||| | ||| | ||||||||    
T  26855333 ggtggtcggaccctttattttgtttgggtttagatcgacc 26855294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 26878154 - 26878289
Alignment:
Q  1 aaaaaatggagaagttaaacgtatattcttagacatacaagctctaaaaatatcataaaatacgagtctctaaactaatagtcctcaaaactagcaaatt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | |||||||||||||||    
T  26878154 aaaaaacggagaagttaaacgtatattcttagacatacaagctctaaaaatatcatagaatacgagtctctaaattaatagttcccaaaactagcaaatt 26878253  T
Q  101 ccttgaatccaaggagaggctaaagtttgatagtcg 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  26878254 ccttgaatccaaggagaggctaaagtttgatagtcg 26878289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 139 - 361
Target Start/End: Complemental strand, 35213453 - 35213231
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    |||||||||||||  |||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||||| | | |||| |||     
T  35213453 tacaggtcactcacgggctcgtcaatccttcctacaacttatttggttactctgtgtttggttggtttggaatgaacgtaataatatactttatactaat 35213354  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    |||||||| ||| | ||||| ||||  || ||||| | || ||||||||| |||||||| || ||||| || |||||||||||||||||||| |||||||    
T  35213353 atccaaacaaccatggaacagctagtagaaaaagttaaatatcactctttgtggtggttaaaggctaataaggccaattttatgtacggtacacaaagat 35213254  T
Q  339 ggtggtcggaccctttattatgt 361  Q
    ||||||||||| |||||||||||    
T  35213253 ggtggtcggacgctttattatgt 35213231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 182 - 361
Target Start/End: Original strand, 38488841 - 38489020
Alignment:
Q  182 tggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttgaacaactagccgataaagtaagatttc 281  Q
    |||||||||||||||||| |||||||||||||||||||||||||| | |||||||| |||||||| ||| | ||||| ||||  || ||||| | || ||    
T  38488841 tggttactttgtgtttggctggtttggaatgaacgtaataatagactttataataatatccaaacaaccatggaacagctagtagaaaaagttaaatatc 38488940  T
Q  282 actctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggaccctttattatgt 361  Q
    ||||||| |||||||| || ||||| ||  |||| |||||||||||||| |||||||||||||| |||||||||||||||    
T  38488941 actctttgtggtggttaaaggctaataagaccaactttatgtacggtacacaaagatggtggtcagaccctttattatgt 38489020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 382
Target Start/End: Original strand, 4106880 - 4106963
Alignment:
Q  299 aaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggaccctttattatgtctaggtattgatcgacctttg 382  Q
    |||| ||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||| | ||| | ||||||||||||    
T  4106880 aaagttaacaaagccaattttatgtatggtatttaaagatggtggtcggaccctttattatgtttgggtttagatcgacctttg 4106963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 355
Target Start/End: Original strand, 27724572 - 27724640
Alignment:
Q  287 ttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggacccttta 355  Q
    ||||||||||| |||||||  ||  ||||||||||||||||| ||||||||||||||||||| ||||||    
T  27724572 ttatggtggttaaaagctagtaacaccaattttatgtacggttctcaaagatggtggtcggatccttta 27724640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 314 - 361
Target Start/End: Complemental strand, 36031726 - 36031679
Alignment:
Q  314 aattttatgtacggtactcaaagatggtggtcggaccctttattatgt 361  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||    
T  36031726 aattttatgtacggtacataaagatggtggtcggaccctttattatgt 36031679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 27724449 - 27724507
Alignment:
Q  164 tcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataa 222  Q
    |||||| | ||||| || ||| ||||||| ||||||||| |||||||||||||||||||    
T  27724449 tcatttttacaactaatatggctactttgcgtttggttgatttggaatgaacgtaataa 27724507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 28327142 - 28327093
Alignment:
Q  173 caacttatttggttactttgtgtttggttggtttggaatgaacgtaataa 222  Q
    |||||||||||| | ||||||| |||| | ||||||||||||||||||||    
T  28327142 caacttatttggcttctttgtgcttgggttgtttggaatgaacgtaataa 28327093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 7e-59; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 142 - 361
Target Start/End: Original strand, 40514029 - 40514248
Alignment:
Q  142 aggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatc 241  Q
    ||||||||||  ||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  40514029 aggtcactcacgggcccgtcaatcctttctacaacttatttggttactatgtgtttggttggtttggaatgaacgtaataatagactctataataatatc 40514128  T
Q  242 caaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggt 341  Q
    ||||||||| | ||||||||||  || ||||| | || ||||||||| |||||| | || ||||| || ||||| |||||||||||| | |||| |||||    
T  40514129 caaaccaccatggaacaactagtagaaaaagttaaatatcactctttgtggtggctaaaggctaataaggccaactttatgtacggttcacaaaaatggt 40514228  T
Q  342 ggtcggaccctttattatgt 361  Q
    ||||||||||||||||||||    
T  40514229 ggtcggaccctttattatgt 40514248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 139 - 385
Target Start/End: Complemental strand, 34829239 - 34828993
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    |||||||||||| |||||||||||||| ||||| |||||||| | |||||||||||  | |||||||||||||||| |||| || ||| |  |||||||     
T  34829239 tacaggtcactcgaaggctcgtcaatcctttcttcaacttatatagttactttgtgccttgttggtttggaatgaatgtaacaacagacttcataataat 34829140  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    |||||||||| | ||||||||||||  || ||||| | ||||||||| || |||||| |||||||||| || |||| ||||||||||| | |||||||||    
T  34829139 atccaaaccaacattgaacaactagtagaaaaagttaaatttcactccttttggtggcttaaagctaataaggccacttttatgtacgattctcaaagat 34829040  T
Q  339 ggtggtcggaccctttattatgtctaggtattgatcgacctttgctt 385  Q
    |||||||| |||||||||||||| |  |||| ||| |||||||||||    
T  34829039 ggtggtcgaaccctttattatgtttgagtatcgattgacctttgctt 34828993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 158 - 359
Target Start/End: Complemental strand, 20857757 - 20857556
Alignment:
Q  158 cgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttgaac 257  Q
    |||||||| || || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||| |||||||| ||| | ||||    
T  20857757 cgtcaatccttcctacaacttatttggttactatgtgtctggttggtttggaatgaacgtaataatagactttataataatatccaaacaaccatggaac 20857658  T
Q  258 aactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggaccctttatt 357  Q
    ||||||  || ||||| | ||  |||||||| |||||| | || ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||    
T  20857657 aactagtagaaaaagttaaataccactctttgtggtggctcaaggctaataaggccaattttatgtacggtacacaaagatggtggtcggaccctttatt 20857558  T
Q  358 at 359  Q
    ||    
T  20857557 at 20857556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 20858029 - 20857941
Alignment:
Q  158 cgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaac 246  Q
    |||||||| || || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||    
T  20858029 cgtcaatccttcctacaacttatttggttactatgtgtctggttggtttggaatgaacgtaataatagactttataataatatccaaac 20857941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 352
Target Start/End: Original strand, 35216261 - 35216434
Alignment:
Q  179 atttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttgaacaactagccgataaagtaagat 278  Q
    |||||||||||| |||| ||| |||| |||||||  ||||| |||||| | | |||||| | |||||||||||| || |||||    || ||||| | ||    
T  35216261 atttggttacttggtgtctgggtggtctggaatgctcgtaacaatagaatatttaataatacccaaaccaccgtagaccaacttttagagaaagttaaat 35216360  T
Q  279 ttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggaccct 352  Q
    |||| |  ||||||||| |||| ||||| || ||||||||| ||||||||||||| |||||||||| |||||||    
T  35216361 ttcatttgttatggtggcttaaggctaagaacgccaattttgtgtacggtactcagagatggtggttggaccct 35216434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 352
Target Start/End: Original strand, 31921671 - 31921883
Alignment:
Q  140 acaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataaca 239  Q
    ||||||||| | ||||| |||  ||| ||||| || || ||||||||||| ||||| ||| |||||||||||||||| || || ||| | | |||||| |    
T  31921671 acaggtcacacgaaggcgcgtagatcctttcttcagctcatttggttactatgtgtgtggatggtttggaatgaacgcaacaacagactttttaataata 31921770  T
Q  240 tccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatg 339  Q
    |||||||  |  |||||    || | || ||||||| ||| || |||||||||||| | |||||||  |||||||| ||| ||||||||  ||| || ||    
T  31921771 tccaaacatcaattgaaggtttatcagaaaaagtaaaattacattctttatggtggctaaaagctagtaaagccaaatttgtgtacggttatcagaggtg 31921870  T
Q  340 gtggtcggaccct 352  Q
    ||||||| |||||    
T  31921871 gtggtcgaaccct 31921883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 355
Target Start/End: Original strand, 46249325 - 46249393
Alignment:
Q  287 ttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggacccttta 355  Q
    ||||||||||| |||| ||| ||  |||||||| |||||||| | ||||||||||||||||||||||||    
T  46249325 ttatggtggttaaaagttaataacaccaattttgtgtacggttcccaaagatggtggtcggacccttta 46249393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 14307091 - 14307012
Alignment:
Q  140 acaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaa 219  Q
    ||||||||||| ||||||||||  |||||| | ||||| || ||| |  |||||||||||||| ||||||||||||||||    
T  14307091 acaggtcactcgaaggctcgtcggtcatttttacaactaatatggcttatttgtgtttggttgatttggaatgaacgtaa 14307012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 345
Target Start/End: Complemental strand, 11237586 - 11237420
Alignment:
Q  179 atttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttgaacaactagccgataaagtaagat 278  Q
    ||||||||| ||||||| | | |||||||||||||||| || || ||| | | |||||| | ||||||  || |||||    || | |||||||||| ||    
T  11237586 atttggttattttgtgtgtagatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatcagataaagtaaaat 11237487  T
Q  279 ttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtc 345  Q
    | ||||||||||||||| | |||||||  |||| ||  ||| |||||||| ||||||| ||||||||    
T  11237486 tgcactctttatggtggctaaaagctagtaaagtcacatttgtgtacggttctcaaaggtggtggtc 11237420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 349
Target Start/End: Complemental strand, 31674749 - 31674540
Alignment:
Q  140 acaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataaca 239  Q
    ||||||||| | ||||| |||  ||| ||||| || || ||||||||||| ||||| ||| |||||||||||||||| || || ||| | | |||||| |    
T  31674749 acaggtcacacgaaggcgcgtagatcctttcttcagctcatttggttactatgtgtgtggatggtttggaatgaacgcaacaacagactttttaataata 31674650  T
Q  240 tccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatg 339  Q
    |||||||  |  |||||    || | || ||||||| ||| || | |||||||||| | |||||||  |||||||| ||| ||||||||  ||| || ||    
T  31674649 tccaaacatcaattgaaggtttatcagaaaaagtaaaattacattgtttatggtggctaaaagctagtaaagccaaatttgtgtacggttatcagaggtg 31674550  T
Q  340 gtggtcggac 349  Q
    ||||||||||    
T  31674549 gtggtcggac 31674540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 46249211 - 46249260
Alignment:
Q  173 caacttatttggttactttgtgtttggttggtttggaatgaacgtaataa 222  Q
    ||||| || ||| ||||||||||||||||| |||||||||||||||||||    
T  46249211 caactaatatggctactttgtgtttggttgatttggaatgaacgtaataa 46249260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 53941096 - 53941023
Alignment:
Q  182 tggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttga 255  Q
    |||||||||||||| ||| | ||||||||||||||||| |||||| | | |||||| |||||||| ||| ||||    
T  53941096 tggttactttgtgtatgggtagtttggaatgaacgtaacaatagaatatttaataatatccaaactaccattga 53941023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 357
Target Start/End: Complemental strand, 14306941 - 14306874
Alignment:
Q  290 tggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggaccctttatt 357  Q
    |||||||| |||||||| ||   ||||||| |||||||| |||| |||||||||||| ||||||||||    
T  14306941 tggtggttaaaagctaataacatcaattttgtgtacggttctcagagatggtggtcgaaccctttatt 14306874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 369
Target Start/End: Complemental strand, 4964007 - 4963954
Alignment:
Q  316 ttttatgtacggtactcaaagatggtggtcggaccctttattatgtctaggtat 369  Q
    |||| |||||||| |||| ||||||||||||||||||||| | ||||| |||||    
T  4964007 ttttgtgtacggttctcagagatggtggtcggaccctttactttgtctgggtat 4963954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 139 - 385
Target Start/End: Original strand, 14687328 - 14687573
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | |||||||||| ||||||||||||||  | | ||||||     
T  14687328 tacaggtcactcaaaggctcgtcagtcatttcttcaacttatttggttactttgtgttttggtggtttggaacgaacgtaataataggctttttaataat 14687427  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    ||||||||||| |||||  | ||||| ||||||||  ||||||| |||||||||||| || ||||||| || |||||||| ||||| ||||| ||| |||    
T  14687428 atccaaaccacagttgacaatctagcagataaagttcgatttcattctttatggtggcttcaagctaataacgccaatttcatgta-ggtacccaacgat 14687526  T
Q  339 ggtggtcggaccctttattatgtctaggtattgatcgacctttgctt 385  Q
     |||||||||||||||||| ||| | ||| | |||||||| ||||||    
T  14687527 agtggtcggaccctttattttgtttgggtctagatcgaccattgctt 14687573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 210 - 361
Target Start/End: Original strand, 14320512 - 14320663
Alignment:
Q  210 atgaacgtaataatagattctataataacatccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaa 309  Q
    ||||||||||||||||| |||||||||| |||||||||||| | ||||||||||  || ||||| | || ||||||||| |||||| | || ||||| ||    
T  14320512 atgaacgtaataatagactctataataatatccaaaccaccatggaacaactagtagaaaaagttaaatatcactctttgtggtggctaaaggctaagaa 14320611  T
Q  310 agccaattttatgtacggtactcaaagatggtggtcggaccctttattatgt 361  Q
     ||||| |||||||||||| | |||||| |||||||||||||||||||||||    
T  14320612 ggccaactttatgtacggttcacaaagacggtggtcggaccctttattatgt 14320663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 2710065 - 2710141
Alignment:
Q  170 ctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaac 246  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| | ||  |||||||||||    
T  2710065 ctccagcttatttggttactttgtgtttgggtggtttggaatgaacgtaataacagattatttaggaacatccaaac 2710141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 33095619 - 33095561
Alignment:
Q  311 gccaattttatgtacggtactcaaagatggtggtcggaccctttattatgtctaggtat 369  Q
    |||| |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  33095619 gccacttttgtgtacggttctcaaagatggtggtcggaccctttgttatgtctaggtat 33095561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 348
Target Start/End: Complemental strand, 2364885 - 2364716
Alignment:
Q  179 atttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttgaacaactagccgataaagtaagat 278  Q
    ||||||||||||||||| ||| ||||||| |||||||| || || ||| | | |||||| | ||||||  || |||||    ||   || ||||||| ||    
T  2364885 atttggttactttgtgtgtggatggtttgaaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttatgagaaaaagtaaaat 2364786  T
Q  279 ttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcgga 348  Q
    | ||||||||||||||| | |||||||  |||||||  ||| |||||||| ||||||| |||||||||||    
T  2364785 tacactctttatggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggtcgga 2364716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 344
Target Start/End: Complemental strand, 22532297 - 22532132
Alignment:
Q  179 atttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttgaacaactagccgataaagtaagat 278  Q
    ||||||||||||||||| ||| |||||||||||||||| || || ||| | | |||||| | ||||||  || |||||    ||   || ||||||| ||    
T  22532297 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttattagaaaaagtaaaat 22532198  T
Q  279 ttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggt 344  Q
    | ||||||||||||||| | |||||||  |||||||  ||| |||||||| ||||||| |||||||    
T  22532197 tacactctttatggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggt 22532132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 25350000 - 25349927
Alignment:
Q  182 tggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttga 255  Q
    |||||||||||||| ||| | ||||||||| ||||||| |||||| | | |||||| |||||||| ||| ||||    
T  25350000 tggttactttgtgtctgggtagtttggaataaacgtaacaatagaatatttaataatatccaaactaccattga 25349927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 139 - 387
Target Start/End: Complemental strand, 9510616 - 9510368
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    |||| |||||||||||||||||||||| || || |||||||||||||||| |||||| |||||||||| ||| |||||||| || | |||  |||| ||     
T  9510616 tacaagtcactcaaaggctcgtcaatccttccttcaacttatttggttacattgtgtctggttggtttcgaacgaacgtaacaacaaatttcataacaat 9510517  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagat 338  Q
    |||||||||||| ||||||||||||| || |||||||  ||||||||||| |||||| |||||||||| || |||| |||| || | |||||||| ||||    
T  9510516 atccaaaccaccattgaacaactagcagaaaaagtaaagtttcactctttttggtggcttaaagctaataaggccacttttgtgcagggtactcacagat 9510417  T
Q  339 ggtggtcggaccctttattatgtctaggtattgatcgacctttgcttct 387  Q
    ||||||||||||||||||||||| | ||||| ||  ||||||| |||||    
T  9510416 ggtggtcggaccctttattatgtttgggtatcgactgacctttacttct 9510368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 139 - 387
Target Start/End: Complemental strand, 6244969 - 6244721
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagatt-ctataataa 237  Q
    ||||||||||| ||||||||||||||| || || ||||||||||||||||||||||| ||||||||||| | ||||||||| || ||||| | |||| ||    
T  6244969 tacaggtcacttaaaggctcgtcaatccttccttcaacttatttggttactttgtgtctggttggtttgta-tgaacgtaacaacagatttcaataacaa 6244871  T
Q  238 catccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaaga 337  Q
     |||||||||||| | ||||||||||| || ||||| |  ||||||||||| || ||| |||||||||| || || | |||| ||||||||||||| |||    
T  6244870 tatccaaaccaccatcgaacaactagcagaaaaagtgaagtttcactctttttgatggcttaaagctaataaggctacttttgtgtacggtactcacaga 6244771  T
Q  338 tggtggtcggaccctttattatgtctaggtattgatcgacctttgcttct 387  Q
    |||||||| ||||||||||||||| | ||||| ||  |||||||||||||    
T  6244770 tggtggtcagaccctttattatgtttgggtatcgactgacctttgcttct 6244721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 139 - 382
Target Start/End: Complemental strand, 25900854 - 25900612
Alignment:
Q  139 tacaggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataac 238  Q
    |||||||||||  |||||||||||||||||||| |||||||| |||||||||||||  ||||||||||||||||||||||| || ||| |  |||||||     
T  25900854 tacaggtcacttgaaggctcgtcaatcatttcttcaacttatatggttactttgtgcctggttggtttggaatgaacgtaacaacagacttcataataat 25900755  T
Q  239 atccaaaccaccgttgaacaactagccgataaagtaagatttcactctttatggtggtttaaagc-taacaaagccaattttatgtacggtactcaaaga 337  Q
    |||||| ||| | ||||||||||||  || || || | |||| |||| || | |||| ||||||| ||| || |||| ||||||||||||| ||||||||    
T  25900754 atccaatccaacattgaacaactagtagaaaaggttaaattttactcctt-ttgtggcttaaagcttaataaggccacttttatgtacggttctcaaaga 25900656  T
Q  338 tggtggtcggaccctttattatgtctaggtattgatcgacctttg 382  Q
    | ||||| |||||||||||||||| | ||||| ||| ||||||||    
T  25900655 t-gtggttggaccctttattatgtttgggtatcgattgacctttg 25900612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 352
Target Start/End: Original strand, 6985098 - 6985271
Alignment:
Q  179 atttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttgaacaactagccgataaagtaagat 278  Q
    ||||| ||||||||||| ||| |||||||||||||||| || || ||| | | |||||| ||||||||  || |||||    || | ||  |||||| ||    
T  6985098 atttgattactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatatccaaacatccattgaaggtttatcagaacaagtaaaat 6985197  T
Q  279 ttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggaccct 352  Q
    | || |||||||||||| | |||||||  |||||||  ||| ||||||||  ||||||||||||||||||||||    
T  6985198 tacattctttatggtggctaaaagctagtaaagccacatttgtgtacggttatcaaagatggtggtcggaccct 6985271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 26658779 - 26658707
Alignment:
Q  154 ggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaatgaacgtaataataga 226  Q
    |||| ||| ||||||||||||  |  ||||| | |||||||||||||| || |||||||||||||||||||||    
T  26658779 ggcttgtcgatcatttctccagttactttggcttctttgtgtttggttagtgtggaatgaacgtaataataga 26658707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 355
Target Start/End: Complemental strand, 9492360 - 9492283
Alignment:
Q  277 atttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggacccttta 355  Q
    |||||| |||||||||||| |||| |||||||| | ||  ||| |||||| | |||| |||||||||||||||||||||    
T  9492360 atttcattctttatggtggcttaaggctaacaatgtcacatttgtgtacgtt-ctcagagatggtggtcggacccttta 9492283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 3939032 - 3938963
Alignment:
Q  142 aggtcactcaaaggctcgtcaatcatttctccaacttatttggttactttgtgtttggttggtttggaat 211  Q
    ||||||||| ||||| |||  ||| ||||| || ||||||||||| |||||||||||| | |||||||||    
T  3939032 aggtcactcgaaggcgcgtagatcctttcttcagcttatttggttgctttgtgtttggatcgtttggaat 3938963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 25192866 - 25192793
Alignment:
Q  182 tggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttga 255  Q
    |||||||||||||| ||| | |||||||||||||| || |||||| | | |||||| |||||||| ||| ||||    
T  25192866 tggttactttgtgtctgggtagtttggaatgaacgcaacaatagaatatttaataatatccaaactaccattga 25192793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 42579806 - 42579887
Alignment:
Q  180 tttggttactttgtgtttggttggtttggaatgaacgtaataatagattctataataacatccaaaccaccgttgaacaact 261  Q
    ||||||| || ||| | ||| ||||||||||||  |||||| ||||| | | ||||||||||||||||||| | ||||||||    
T  42579806 tttggttgctatgtttctgggtggtttggaatgctcgtaatgatagaatatttaataacatccaaaccaccatagaacaact 42579887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 355
Target Start/End: Original strand, 50912 - 50990
Alignment:
Q  277 atttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggacccttta 355  Q
    |||||| |||||||||||| |||| || ||||| ||||  ||| |||| ||| |||| |||||||||||||| ||||||    
T  50912 atttcattctttatggtggcttaaggcaaacaaggccacatttgtgtaaggttctcagagatggtggtcggatccttta 50990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 357
Target Start/End: Complemental strand, 21784 - 21704
Alignment:
Q  277 atttcactctttatggtggtttaaagctaacaaagccaattttatgtacggtactcaaagatggtggtcggaccctttatt 357  Q
    |||||| ||| |||||||| |||||| ||| || ||||  ||| || ||||| |||| ||||||||||||||||| |||||    
T  21784 atttcattctatatggtggcttaaagttaataatgccacgtttgtgcacggttctcagagatggtggtcggaccccttatt 21704  T

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