View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10068_low_3 (Length: 395)
Name: NF10068_low_3
Description: NF10068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10068_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 385
Target Start/End: Complemental strand, 31460378 - 31460020
Alignment:
| Q |
17 |
aggtttgtctagttgctaaagaacagctcatactccgtaagggtttgagttcaactctcactcattgagtaaggatctcgttgatacgtaatcaacgttc |
116 |
Q |
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| T |
31460378 |
aggtttgtctagttgctaaagaacagctcatactccgttagggtttgagttcaactctcactcattgagtaaggatctcgttgatacgtaatcaacgttc |
31460279 |
T |
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| Q |
117 |
tttgagtcttgaggtctgtatgaccctgattagctgagactcaactcagctaaactttaccacatcaaaaatacatgaaggaat----tagtgttaatta |
212 |
Q |
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| T |
31460278 |
tttgagtcttgaggtctgtatgaccctga--------------actcagctaaactttaccacatcaaaaatacatgaaggaatgaattagtgttaatta |
31460193 |
T |
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| Q |
213 |
taatacttttatttggtaacaataatgatttattatggtactaatatgtaatgttatggatgcaggaggtcacataaacccagcagtgacattcggtttg |
312 |
Q |
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| T |
31460192 |
taatacttttatttggtaacaataatgatttattatggtactaatatgtaatgttatggatgcagggggtcacataaacccagcagtgacattcggtttg |
31460093 |
T |
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| Q |
313 |
ttcttggcaaggaaattgtcattgaccagggctgtgttctacatggttatgcaaacccttggtgctatctgtg |
385 |
Q |
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| T |
31460092 |
ttcttggcaaggaaattgtcattgaccagggctgtgttctacatggttatgcaaacccttggtgctatctgtg |
31460020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 271 - 366
Target Start/End: Complemental strand, 35230425 - 35230330
Alignment:
| Q |
271 |
gatgcaggaggtcacataaacccagcagtgacattcggtttgttcttggcaaggaaattgtcattgaccagggctgtgttctacatggttatgcaa |
366 |
Q |
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| T |
35230425 |
gatgcaggtggtcacataaatccagcagtcacatttgggctatttttggcaaggaaattgtcattgacaagagcattgttctacatggtgatgcaa |
35230330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 2649701 - 2649628
Alignment:
| Q |
283 |
cacataaacccagcagtgacattcggtttgttcttggcaaggaaattgtcattgaccagggctgtgttctacat |
356 |
Q |
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| T |
2649701 |
cacataaatccagcagtgacattcggtctgtttttggctaggaagctgtccttgacaagagcagtattctacat |
2649628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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