View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10068_low_4 (Length: 358)
Name: NF10068_low_4
Description: NF10068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10068_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 3 - 348
Target Start/End: Original strand, 3710075 - 3710421
Alignment:
| Q |
3 |
gttcataattcaataataatttgaggtttatgttcacatttaacaaagtagacatatctcagttacgaataatggtcttgtttacttaata--gaactct |
100 |
Q |
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| T |
3710075 |
gttcctaattgaataataatttgaggtttatgttcacatttaacaaagtagacatatcttagttttgaataatggtcttgtttacctaatatagaactct |
3710174 |
T |
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| Q |
101 |
aatcttagnnnnnnnnctcatgtcatcaaaagcttgcaagaatgttaaactat--catactaattaattccctatctctaggaaaattaccttagcaaat |
198 |
Q |
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| T |
3710175 |
aatctta--aaaaaaactcatgtcatcaaaagcttggaagaatgttaaactatgtcatactaattaattccctatctctaggaaaattaccttagcaaat |
3710272 |
T |
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| Q |
199 |
aatatatctagattatgtcacgtggtccattttaaaactcannnnnnncgtctttcaatatgtgcggggatcgtggttgcatgcatggggtgcattggac |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
3710273 |
aatatatctagattatgtcacgtggtccattttaaaactca-ttttttcgtctttcaatatgtgcggggatcgtgattgcattcatggggtgcattggag |
3710371 |
T |
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| Q |
299 |
aatgactattttccttgttttcttcattatttatgtgcttttcgcctttg |
348 |
Q |
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|||| |||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
3710372 |
aatggctattttcctcatttccttcattatttatgtgcttttcgcctttg |
3710421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 9848595 - 9848623
Alignment:
| Q |
183 |
aattaccttagcaaataatatatctagat |
211 |
Q |
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| T |
9848595 |
aattaccttagcaaataatatatctagat |
9848623 |
T |
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