View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10068_low_8 (Length: 253)
Name: NF10068_low_8
Description: NF10068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10068_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 57 - 243
Target Start/End: Original strand, 41984962 - 41985148
Alignment:
| Q |
57 |
aaatcaaatatacatatttttgaaaatgtattgttgatgataataagaaagtgttgtattagatttacttgaaaatgggttgatgattatgagaagcttt |
156 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41984962 |
aaatcaaatacacatatttttgaaaatgtattcttgatgataataagaaagtgttgtattagatttacttgaaaatgagttgatgattatgagaagcttt |
41985061 |
T |
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| Q |
157 |
atggattgtgtggctaccgcttcaacctcaagtattacctgtgggcacttgtatttcataccagcaggaggctgaataacctttgct |
243 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41985062 |
atggattgtgtggctaccgcttcaacctcaactattacatgtgggcacttgtatttcataccagcaggaggctgaataacctttgct |
41985148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 57 - 178
Target Start/End: Complemental strand, 46757190 - 46757069
Alignment:
| Q |
57 |
aaatcaaatatacatatttttgaaaatgtattgttgatgataataagaaagtgttgtattagatttacttgaaaatgggttgatgattatgagaagcttt |
156 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46757190 |
aaatcaaatacacatatttttgaaaatgtattgttgatgataataagaaagtgttgtattagatttacttgaaaatgggttgatgattatgagaagcttt |
46757091 |
T |
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| Q |
157 |
atggattgtgtggctaccgctt |
178 |
Q |
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| T |
46757090 |
atggattgtgtggctaccgctt |
46757069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 57 - 178
Target Start/End: Original strand, 26470514 - 26470635
Alignment:
| Q |
57 |
aaatcaaatatacatatttttgaaaatgtattgttgatgataataagaaagtgttgtattagatttacttgaaaatgggttgatgattatgagaagcttt |
156 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26470514 |
aaatcaaatacacatatttttgaaaatgtattgttgatgataataagaaagtgttgtattagatttacttgaaaatgggttgatgattatgagaagcttt |
26470613 |
T |
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| Q |
157 |
atggattgtgtggctaccgctt |
178 |
Q |
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|||||||||||||||||||||| |
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| T |
26470614 |
atggattgtgtggctaccgctt |
26470635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 57 - 178
Target Start/End: Original strand, 36957296 - 36957417
Alignment:
| Q |
57 |
aaatcaaatatacatatttttgaaaatgtattgttgatgataataagaaagtgttgtattagatttacttgaaaatgggttgatgattatgagaagcttt |
156 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36957296 |
aaatcaaatacacatatttttgaaaatgtattgttgatgataataagaaagtgttgtattagatttacttgaaaatgggttgatgattatgagaagcttt |
36957395 |
T |
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| Q |
157 |
atggattgtgtggctaccgctt |
178 |
Q |
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|||||||| ||||||||||||| |
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| T |
36957396 |
atggattgcgtggctaccgctt |
36957417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 43016763 - 43016824
Alignment:
| Q |
182 |
cctcaagtattacctgtgggcacttgtatttcataccagcaggaggctgaataacctttgct |
243 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43016763 |
cctcaactattacctgtgggcacttgtatttcataccagcaggaggctgaataacctttgct |
43016824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 620010 - 620067
Alignment:
| Q |
88 |
tgttgatgataataagaaagtgttgtattagatttacttgaaaatgggttgatgattatg |
147 |
Q |
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| T |
620010 |
tgttgatgataataaaaaagtatt--atgagatttagttgaaaatgggttgatgattatg |
620067 |
T |
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