View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10069_high_4 (Length: 421)

Name: NF10069_high_4
Description: NF10069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10069_high_4
NF10069_high_4
[»] chr4 (10 HSPs)
chr4 (13-407)||(55907601-55907995)
chr4 (273-375)||(661854-661956)
chr4 (198-323)||(3437630-3437755)
chr4 (205-305)||(547943-548043)
chr4 (209-322)||(1755485-1755598)
chr4 (26-161)||(547773-547908)
chr4 (277-324)||(571330-571377)
chr4 (23-133)||(1527362-1527472)
chr4 (285-324)||(553767-553806)
chr4 (270-366)||(8186326-8186422)
[»] chr2 (3 HSPs)
chr2 (13-405)||(1036539-1036931)
chr2 (326-405)||(1036345-1036424)
chr2 (272-322)||(45244859-45244909)
[»] chr8 (9 HSPs)
chr8 (274-374)||(14004140-14004240)
chr8 (34-146)||(17627169-17627281)
chr8 (272-388)||(17642880-17642996)
chr8 (20-63)||(44244814-44244857)
chr8 (277-366)||(17635623-17635712)
chr8 (274-374)||(5766564-5766664)
chr8 (278-322)||(32151969-32152013)
chr8 (277-324)||(21236154-21236201)
chr8 (293-331)||(18314640-18314678)
[»] chr7 (2 HSPs)
chr7 (272-327)||(10615708-10615763)
chr7 (270-384)||(7977866-7977980)
[»] chr1 (3 HSPs)
chr1 (275-357)||(7555196-7555278)
chr1 (279-339)||(33161200-33161260)
chr1 (272-324)||(9581685-9581737)
[»] chr6 (8 HSPs)
chr6 (272-327)||(6417087-6417142)
chr6 (272-324)||(7132300-7132352)
chr6 (279-322)||(6395539-6395582)
chr6 (273-324)||(7135224-7135275)
chr6 (273-324)||(7138147-7138198)
chr6 (279-324)||(6423907-6423952)
chr6 (279-319)||(6427183-6427223)
chr6 (296-324)||(9412143-9412171)
[»] chr3 (1 HSPs)
chr3 (268-327)||(13469655-13469714)
[»] scaffold1155 (1 HSPs)
scaffold1155 (285-366)||(1853-1934)
[»] scaffold0345 (1 HSPs)
scaffold0345 (285-366)||(8282-8363)
[»] scaffold0105 (1 HSPs)
scaffold0105 (285-366)||(30616-30697)
[»] chr5 (1 HSPs)
chr5 (277-318)||(20477455-20477496)


Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 13 - 407
Target Start/End: Complemental strand, 55907995 - 55907601
Alignment:
Q  13 aaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatattataataacccgagagatta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  55907995 aaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcgtctatattataataacccgagagatta 55907896  T
Q  113 accttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaaaatctctactagcgaaaggattactactactaaagtcaagtt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  55907895 accttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaaaatctctactagcgaaaggattactactactgaagtcaagtt 55907796  T
Q  213 cttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaaagttgtaatattttg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  55907795 cttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttacgtagagaagcaatgttggaacaaatgagagaattcaaagttgtaatattttg 55907696  T
Q  313 ggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaagtg 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907695 ggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaagtg 55907601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 375
Target Start/End: Original strand, 661854 - 661956
Alignment:
Q  273 tgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagt 372  Q
    ||||| ||||||||||||| || ||||||||||||| ||||||||||||||| || ||| ||||||| ||| | | |||||||||||||||||| || ||    
T  661854 tgttgtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgagtgacgt 661953  T
Q  373 gat 375  Q
    |||    
T  661954 gat 661956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 198 - 323
Target Start/End: Complemental strand, 3437755 - 3437630
Alignment:
Q  198 tactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaa 297  Q
    |||||| ||||||| ||||||| ||||||||||||||||| |||||||  || |    || ||| ||| || ||| |||||||||| ||||||| |||||    
T  3437755 tactaaggtcaagtacttcaagtaaagggaagcaatcagagataagaattagatagcggtcatggagaaaatcaaagttggaacaactgagagaggtcaa 3437656  T
Q  298 agttgtaatattttgggagaaagctc 323  Q
    ||||||||| ||||||||||||||||    
T  3437655 agttgtaatcttttgggagaaagctc 3437630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 205 - 305
Target Start/End: Original strand, 547943 - 548043
Alignment:
Q  205 gtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaaagttgta 304  Q
    |||||||||||||||||||||||||||| |||| |||  ||| ||||| ||||||   |||||| |||||||||||||| |||||||  |||||||||||    
T  547943 gtcaagttcttcaaggaaagggaagcaaccagatatacaaaccaggtcgttgttacagagagaatcaatgttggaacaagtgagagagttcaaagttgta 548042  T
Q  305 a 305  Q
    |    
T  548043 a 548043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 322
Target Start/End: Original strand, 1755485 - 1755598
Alignment:
Q  209 agttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaaagttgtaatat 308  Q
    ||||||||||| |||||||| || |||| ||| || |  | ||||||| |||| |||  ||| |||||||||||  ||||||| |||||||||||||| |    
T  1755485 agttcttcaagcaaagggaaacagtcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaatct 1755584  T
Q  309 tttgggagaaagct 322  Q
    |||| |||||||||    
T  1755585 tttgagagaaagct 1755598  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 547773 - 547908
Alignment:
Q  26 aacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatattataataacccgagagattaaccttgcggagct 125  Q
    ||||||| || |||||| |||||||||||| | | ||| || || |||||  | ||||||| |||||  |||| ||| || | |||||||||||||||||    
T  547773 aacatcacaaactcttcgagaaactcacaactttgacacaagtgaaaaagcaatgagtcatttatatagtaatgaccagataaattaaccttgcggagct 547872  T
Q  126 taggaagcaccattgccatagtctttacccaaacat 161  Q
    |||||||| |  ||| ||||| |||||||| |||||    
T  547873 taggaagcgctgttgacatagcctttaccccaacat 547908  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 571330 - 571377
Alignment:
Q  277 ggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 324  Q
    ||||||| ||||||| |||||||||||||||||||||||||| |||||    
T  571330 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcg 571377  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 1527472 - 1527362
Alignment:
Q  23 ttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatattataataacccgagagattaaccttgcgga 122  Q
    |||||||||| || ||||| ||||||  ||||||| ||||| || ||||||||  ||||||||| |  ||  | || ||| ||||||||||||||| |||    
T  1527472 ttcaacatcaaaatctcttgaagaaatacacaatttttacacaagtgcaaaagcaacgagtcatttgcatagtgatgaccagagagattaaccttgtgga 1527373  T
Q  123 gcttaggaagc 133  Q
    |||||||||||    
T  1527372 gcttaggaagc 1527362  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 324
Target Start/End: Original strand, 553767 - 553806
Alignment:
Q  285 tgagagaagtcaaagttgtaatattttgggagaaagctcg 324  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  553767 tgagagaggtcaaagttgtaatgttttgggagaaagctcg 553806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 8186422 - 8186326
Alignment:
Q  270 caatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 366  Q
    |||||||||||||  |||| || |||||||||||||||||| |||||| | |||| || ||| | || || ||| | |||| ||| |||||||||||    
T  8186422 caatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgag 8186326  T

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Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Complemental strand, 1036931 - 1036539
Alignment:
Q  13 aaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatattataataacccgagagatta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1036931 aaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcgtctatattataataacccgagagatta 1036832  T
Q  113 accttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaaaatctctactagcgaaaggattactactactaaagtcaagtt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  1036831 accttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaaaatctctactagcgaaaggattactactattgaagtcaagtt 1036732  T
Q  213 cttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaaagttgtaatattttg 312  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036731 cttcaaggaaaggaaagcaatcagaaataagaacaagatcattgttacatatagaagcaatgttggaacaaatgagagaagtcaaagttgtaatattttg 1036632  T
Q  313 ggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaag 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1036631 ggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggtagagaag 1036539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 326 - 405
Target Start/End: Complemental strand, 1036424 - 1036345
Alignment:
Q  326 aagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaag 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036424 aagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaag 1036345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 45244909 - 45244859
Alignment:
Q  272 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagct 322  Q
    |||||| ||||||||||||| |||||| || ||||| ||||||||||||||    
T  45244909 atgttgtaacaaatgagagaggtcaaatttctaatagtttgggagaaagct 45244859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 374
Target Start/End: Original strand, 14004140 - 14004240
Alignment:
Q  274 gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 373  Q
    |||||||||||| || || |||||||||||||| || || ||||||||||| || ||| |||| || | ||| ||||||||||| ||||||||||| |||    
T  14004140 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgggttggttggaaagattgagcgatgtg 14004239  T
Q  374 a 374  Q
    |    
T  14004240 a 14004240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 17627281 - 17627169
Alignment:
Q  34 aacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatattataataacccgagagattaaccttgcggagcttaggaagc 133  Q
    ||||||||| |||||||||||||| ||||| || ||||||||| | ||||||  |||||  |||| ||  || | ||| | |||||||||||||||||||    
T  17627281 aacctcttcgagaaactcacaatttttacacaagtgcaaaagtaatgagtcacttatatcgtaatgacgagataaatttatcttgcggagcttaggaagc 17627182  T
Q  134 accattgccatag 146  Q
    ||||||| |||||    
T  17627181 accattgacatag 17627169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 388
Target Start/End: Complemental strand, 17642996 - 17642880
Alignment:
Q  272 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaag 371  Q
    |||| ||||||| ||||||| ||||||||||||||||| |||||||||||| |||| ||| | | ||| ||| |  | ||||||||||||||||| || |    
T  17642996 atgtgggaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatg 17642897  T
Q  372 tgatatttaatggaaaa 388  Q
    |||  || |||||||||    
T  17642896 tgagtttcaatggaaaa 17642880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 44244814 - 44244857
Alignment:
Q  20 catttcaacatcataacctcttcaagaaactcacaattcttaca 63  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  44244814 catttcaacatcctaacctcttcaagaaactcacaattcttaca 44244857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 366
Target Start/End: Complemental strand, 17635712 - 17635623
Alignment:
Q  277 ggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 366  Q
    ||||||| ||||||| |||||||||||||||||  |||||||||||||||| ||| |||  || ||| |  |||||||||| ||||||||    
T  17635712 ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgag 17635623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 374
Target Start/End: Complemental strand, 5766664 - 5766564
Alignment:
Q  274 gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 373  Q
    |||||||||||| || || |||||||||||||| || || ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  5766664 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 5766565  T
Q  374 a 374  Q
    |    
T  5766564 a 5766564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 32151969 - 32152013
Alignment:
Q  278 gaacaaatgagagaagtcaaagttgtaatattttgggagaaagct 322  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||    
T  32151969 gaacaagtgagagaggtcaaagttgtaatgttttgggagaaagct 32152013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 21236154 - 21236201
Alignment:
Q  277 ggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 324  Q
    ||||||| ||||||| |||||||||||| ||||||||||||| |||||    
T  21236154 ggaacaattgagagatgtcaaagttgtagtattttgggagaatgctcg 21236201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 18314678 - 18314640
Alignment:
Q  293 gtcaaagttgtaatattttgggagaaagctcgtaagcca 331  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  18314678 gtcaaagttgtaatattttgagagaaaactcgtaagcca 18314640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 10615708 - 10615763
Alignment:
Q  272 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaa 327  Q
    |||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||||    
T  10615708 atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaa 10615763  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 384
Target Start/End: Original strand, 7977866 - 7977980
Alignment:
Q  270 caatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcga 369  Q
    ||||||| |||||  |||| || |||||||||| |||||||||||||||| || | || |||  ||| || ||| |||| ||||||||||||||||| ||    
T  7977866 caatgttagaacatttgagtgaggtcaaagttgcaatattttgggagaaaactggcaacccataagccggaatggtagggtggttggagagattgagtga 7977965  T
Q  370 agtgatatttaatgg 384  Q
     ||||| || |||||    
T  7977966 cgtgattttcaatgg 7977980  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 357
Target Start/End: Original strand, 7555196 - 7555278
Alignment:
Q  275 ttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttgga 357  Q
    ||||||||| |||| || || ||||||||||||||||||||||||||||| || ||| | || |||||| | |||||||||||    
T  7555196 ttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcagggatggtgggttggttgga 7555278  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 33161200 - 33161260
Alignment:
Q  279 aacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggg 339  Q
    ||||| ||||||||||||||||| ||||  |||||||||||| ||| |||||| |||||||    
T  33161200 aacaagtgagagaagtcaaagttttaatggtttgggagaaagttcgcaagccattagcggg 33161260  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 9581685 - 9581737
Alignment:
Q  272 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 324  Q
    ||||| |||||||||||||| ||||| |||||||| |||  ||||||||||||    
T  9581685 atgttcgaacaaatgagagatgtcaacgttgtaatctttacggagaaagctcg 9581737  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 6417087 - 6417142
Alignment:
Q  272 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaa 327  Q
    |||| ||||||| ||||||| |||||||||||| | ||||||||||||||||||||    
T  6417087 atgtgggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaa 6417142  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 7132300 - 7132352
Alignment:
Q  272 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 324  Q
    ||||||||||||  |||||| | |||||||||||| |||||||||||||||||    
T  7132300 atgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcg 7132352  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 322
Target Start/End: Original strand, 6395539 - 6395582
Alignment:
Q  279 aacaaatgagagaagtcaaagttgtaatattttgggagaaagct 322  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||    
T  6395539 aacaactgagagaggtcaaagttgtaatattttgggagagagct 6395582  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 7135224 - 7135275
Alignment:
Q  273 tgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 324  Q
    |||||||||||  |||||| | |||||||||||| |||||||||||||||||    
T  7135224 tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcg 7135275  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 7138147 - 7138198
Alignment:
Q  273 tgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 324  Q
    |||||||||||  |||||| | |||||||||||| |||||||||||||||||    
T  7138147 tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcg 7138198  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 6423907 - 6423952
Alignment:
Q  279 aacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 324  Q
    ||||| ||||||| ||||||||||| || |||||||||||||||||    
T  6423907 aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcg 6423952  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 6427183 - 6427223
Alignment:
Q  279 aacaaatgagagaagtcaaagttgtaatattttgggagaaa 319  Q
    ||||| ||||| | |||||||||||||||||||||||||||    
T  6427183 aacaagtgagaaaggtcaaagttgtaatattttgggagaaa 6427223  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 324
Target Start/End: Original strand, 9412143 - 9412171
Alignment:
Q  296 aaagttgtaatattttgggagaaagctcg 324  Q
    |||||||||||||||||||||||||||||    
T  9412143 aaagttgtaatattttgggagaaagctcg 9412171  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 13469714 - 13469655
Alignment:
Q  268 agcaatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaa 327  Q
    |||||||| ||||||| ||||||| ||||  |||||| | ||||||||||||||||||||    
T  13469714 agcaatgtgggaacaagtgagagaggtcagcgttgtattcttttgggagaaagctcgtaa 13469655  T

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Target: scaffold1155 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 366
Target Start/End: Complemental strand, 1934 - 1853
Alignment:
Q  285 tgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 366  Q
    |||||| | |||||||||||||||||||||| ||| |||| || |||   ||||| || || ||||||| ||||||||||||    
T  1934 tgagagtattcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgag 1853  T

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Target: scaffold0345 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 366
Target Start/End: Original strand, 8282 - 8363
Alignment:
Q  285 tgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 366  Q
    |||||| | |||||||||||||||||||||| ||| |||| || |||   ||||| || || ||||||| ||||||||||||    
T  8282 tgagagtattcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgag 8363  T

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Target: scaffold0105 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 366
Target Start/End: Complemental strand, 30697 - 30616
Alignment:
Q  285 tgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 366  Q
    |||||| | |||||||||||||||||||||| ||| |||| || |||   ||||| || || ||||||| ||||||||||||    
T  30697 tgagagtattcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgag 30616  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 20477496 - 20477455
Alignment:
Q  277 ggaacaaatgagagaagtcaaagttgtaatattttgggagaa 318  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||    
T  20477496 ggaacaactgagagaggtcaaagttttaatattttgggagaa 20477455  T

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