View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10069_high_5 (Length: 405)

Name: NF10069_high_5
Description: NF10069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10069_high_5
NF10069_high_5
[»] chr1 (30 HSPs)
chr1 (8-291)||(13421345-13421628)
chr1 (13-255)||(13506764-13507006)
chr1 (13-255)||(13513946-13514188)
chr1 (8-259)||(20477993-20478244)
chr1 (13-250)||(13650554-13650791)
chr1 (13-256)||(13610832-13611075)
chr1 (8-259)||(13671025-13671276)
chr1 (13-256)||(13685276-13685519)
chr1 (13-256)||(19137649-19137892)
chr1 (8-259)||(20368920-20369171)
chr1 (10-260)||(15898538-15898788)
chr1 (9-257)||(13543866-13544114)
chr1 (13-260)||(13655626-13655861)
chr1 (143-259)||(13588359-13588475)
chr1 (158-278)||(13421641-13421761)
chr1 (80-189)||(16467913-16468022)
chr1 (324-399)||(13508206-13508281)
chr1 (324-399)||(13515394-13515469)
chr1 (324-399)||(13544574-13544649)
chr1 (324-399)||(13612001-13612076)
chr1 (324-399)||(13686444-13686519)
chr1 (324-399)||(19136648-19136723)
chr1 (324-399)||(20488287-20488362)
chr1 (324-359)||(13422344-13422379)
chr1 (324-399)||(13588719-13588794)
chr1 (324-399)||(13651704-13651779)
chr1 (324-399)||(13671515-13671590)
chr1 (324-399)||(20369406-20369481)
chr1 (324-399)||(20478479-20478554)
chr1 (324-399)||(15898194-15898269)
[»] scaffold0006 (10 HSPs)
scaffold0006 (13-250)||(140315-140552)
scaffold0006 (8-278)||(110390-110660)
scaffold0006 (8-259)||(168639-168890)
scaffold0006 (9-259)||(219231-219481)
scaffold0006 (13-260)||(145387-145622)
scaffold0006 (9-257)||(57456-57704)
scaffold0006 (324-399)||(110877-110952)
scaffold0006 (324-399)||(141465-141540)
scaffold0006 (324-399)||(169129-169204)
scaffold0006 (324-399)||(219710-219785)
[»] chr2 (1 HSPs)
chr2 (10-256)||(38057188-38057434)
[»] chr6 (4 HSPs)
chr6 (8-261)||(22283390-22283643)
chr6 (8-262)||(21814908-21815150)
chr6 (324-398)||(21815474-21815548)
chr6 (324-399)||(22283082-22283157)
[»] scaffold0069 (4 HSPs)
scaffold0069 (8-259)||(27019-27270)
scaffold0069 (79-259)||(31205-31385)
scaffold0069 (324-399)||(27467-27542)
scaffold0069 (324-399)||(31582-31657)
[»] scaffold0012 (4 HSPs)
scaffold0012 (8-259)||(116239-116490)
scaffold0012 (9-260)||(108423-108662)
scaffold0012 (324-398)||(108999-109073)
scaffold0012 (324-399)||(116725-116800)
[»] scaffold0783 (2 HSPs)
scaffold0783 (8-259)||(42-293)
scaffold0783 (324-399)||(505-580)
[»] scaffold0068 (2 HSPs)
scaffold0068 (9-257)||(40334-40582)
scaffold0068 (324-399)||(39793-39868)
[»] chr8 (3 HSPs)
chr8 (9-260)||(20814160-20814399)
chr8 (324-398)||(20813432-20813506)
chr8 (324-399)||(20792891-20792966)
[»] scaffold0460 (1 HSPs)
scaffold0460 (324-359)||(9276-9311)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 8 - 291
Target Start/End: Original strand, 13421345 - 13421628
Alignment:
Q  8 gtgaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctag 107  Q
    ||||||| ||||||||||||||||||| | || ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||    
T  13421345 gtgaatgaagctcccatatttgagtttaatcagctaagtactttattgctttggaaattacacaacctcaaaggtttctatgctggaaatcatactctag 13421444  T
Q  108 catgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaaca 207  Q
    |||| ||||||||||| || ||| ||||||||   |||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||| ||| |||    
T  13421445 catgcccatctttgaggaatattaatgtttccagatgtacaaagttgaaattgttcagaacactatctacaacaagctccaattttcgagatgacagaca 13421544  T
Q  208 ctttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatatcatgaaaacaccatgtctgtagtacttgtctttt 291  Q
    || | |||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| | |||||| |||||| ||||    
T  13421545 ctctcttttaatgcaacaaccacttttcgttgccgaagaggtatgcatatcatgaacacaccaggcctgtaggacttgtgtttt 13421628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 13506764 - 13507006
Alignment:
Q  13 tgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctagcatgt 112  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||  || |||| |||||||||||||||||||||||||||||||||     
T  13506764 tgcagctcccatatttgagtttaatcaactaagtactttattgctttggaacttacctaaactcaatggtttctatgctggaaatcatactctagcatgc 13506863  T
Q  113 ccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacactttg 212  Q
    |||||||||||||||||  |||| ||    |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||| || ||    
T  13506864 ccatctttgagaaaaatcaatgtctctagatgtacaaagttgaaattgttcagaacactatctacaagaagctccaattttcgagatgacaaaccctctg 13506963  T
Q  213 ttttaacgcaacaaccacttttcattgccgaagaggtatgcat 255  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||    
T  13506964 ttttaacgcaaccaccacttttcattgctgaagaggtacgcat 13507006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 13513946 - 13514188
Alignment:
Q  13 tgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctagcatgt 112  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||  || |||| |||||||||||||||||||||||||||||||||     
T  13513946 tgcagctcccatatttgagtttaatcaactaagtactttattgctttggaacttacctaaactcaatggtttctatgctggaaatcatactctagcatgc 13514045  T
Q  113 ccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacactttg 212  Q
    |||||||||||||||||  |||| ||    |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||| || ||    
T  13514046 ccatctttgagaaaaatcaatgtctctagatgtacaaagttgaaattgttcagaacactatctacaagaagctccaattttcgagatgacaaaccctctg 13514145  T
Q  213 ttttaacgcaacaaccacttttcattgccgaagaggtatgcat 255  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||    
T  13514146 ttttaacgcaaccaccacttttcattgctgaagaggtacgcat 13514188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 20477993 - 20478244
Alignment:
Q  8 gtgaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctag 107  Q
    ||||||||||||||  ||||||| ||| | |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||| |||||      
T  20477993 gtgaatgcagctccggtatttgaatttaatcaactaagtactttattgctttggaacttacataaactcaatggtttctatgctggaaatcacactctgc 20478092  T
Q  108 catgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaaca 207  Q
     ||||||||||||||| ||| ||||||||| | || ||||||||||||||||||| |||||||  ||||| |||||||||||||||| |||| |||||||    
T  20478093 tatgtccatctttgaggaaagttgatgtttgcaatggtacaaagttgaatttgtttagaactcattctacaagaagctccaattttcaagatgacaaaca 20478192  T
Q  208 ctttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatatca 259  Q
    || |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  20478193 ctctgttttaaagcaacaaccacttttcattgctgaagaggtatgcatatca 20478244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 13650554 - 13650791
Alignment:
Q  13 tgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctagcatgt 112  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||| ||  || |||| ||||||||||||||||||||||||||||| ||||    
T  13650554 tgcagctcccatatttgagtttaatcaactaagtactttattgctttggaactcacctaaactcaatggtttctatgctggaaatcatactctagaatgt 13650653  T
Q  113 ccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacactttg 212  Q
    ||||| |||||| ||||| |||| ||    |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||| || ||    
T  13650654 ccatcattgagagaaattaatgtctctagatgtacaaagttgaaattgttcagaacactatctacaagaagctccaattttcgagatgacaaaccctctg 13650753  T
Q  213 ttttaacgcaacaaccacttttcattgccgaagaggta 250  Q
    |||||||||||| |||||||||||||||||||||||||    
T  13650754 ttttaacgcaaccaccacttttcattgccgaagaggta 13650791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 13610832 - 13611075
Alignment:
Q  13 tgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctagcatgt 112  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||   || |||| |||||||||||||||||||||||||||||||||     
T  13610832 tgcagctcccatatttgagtttaatcaactaagtactttattgctttggaacttaactaaactcaatggtttctatgctggaaatcatactctagcatgc 13610931  T
Q  113 ccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacactttg 212  Q
    |||||||||||||||||  |||| ||    |||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||| || ||    
T  13610932 ccatctttgagaaaaatcaatgtctctagatgtacaaaattgaaattgttcagaacactatctacaagaagctccaattttcgagatgacaaaccctctg 13611031  T
Q  213 ttttaacgcaacaaccacttttcattgccgaagaggtatgcata 256  Q
    || ||||||||| ||||||||||||||||||||||||| |||||    
T  13611032 ttataacgcaaccaccacttttcattgccgaagaggtacgcata 13611075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 13671025 - 13671276
Alignment:
Q  8 gtgaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctag 107  Q
    ||||||||||||||  ||||||| ||| | |||||||||||||||||||||||| ||| ||  || |||| |||||||||||||||||||||||||||      
T  13671025 gtgaatgcagctccggtatttgaatttaatcaactaagtactttattgctttggcactcacctaaactcaatggtttctatgctggaaatcatactctgc 13671124  T
Q  108 catgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaaca 207  Q
     ||||||||||||||| ||| ||||||||| | |||||||||||||||||||||| |||||||  ||||| ||||||||||||||| ||||| |||||||    
T  13671125 tatgtccatctttgaggaaagttgatgtttacaattgtacaaagttgaatttgtttagaactcattctacaagaagctccaattttggagatgacaaaca 13671224  T
Q  208 ctttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatatca 259  Q
    || |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  13671225 ctctgttttaaagcaacaaccacttttcattgctgaagaggtatgcatatca 13671276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 13685276 - 13685519
Alignment:
Q  13 tgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctagcatgt 112  Q
    ||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||   || |||| |||||||||||||||||||||||||||||||||     
T  13685276 tgcagcttccatatttgagtttaatcaacttagtactttattgctttggaacttaactaaactcaatggtttctatgctggaaatcatactctagcatgc 13685375  T
Q  113 ccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacactttg 212  Q
    |||||||||||||||||  |||| ||    |||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||| || ||    
T  13685376 ccatctttgagaaaaatcaatgtctctagatgtacaaatttgaaattgttcagaacactatctacaagaagctccaattttcgagatgacaaaccctctg 13685475  T
Q  213 ttttaacgcaacaaccacttttcattgccgaagaggtatgcata 256  Q
    |||||||||||| ||||||||||||||||||||||||| |||||    
T  13685476 ttttaacgcaaccaccacttttcattgccgaagaggtacgcata 13685519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 19137892 - 19137649
Alignment:
Q  13 tgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctagcatgt 112  Q
    |||||||||||||||||||||| | |||||||||| |||||| |||||| ||| ||  || |||| |||||||||||||||||||||||||||||||||     
T  19137892 tgcagctcccatatttgagtttaatcaactaagtagtttattactttggcactcacctaaactcaatggtttctatgctggaaatcatactctagcatgc 19137793  T
Q  113 ccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacactttg 212  Q
    |||||||||||||||||  |||| ||    |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||| || ||    
T  19137792 ccatctttgagaaaaatcaatgtctctagatgtacaaagttgaaattgttcagaacactatctacaagaagctccaattttcgagatgacaaaccctctg 19137693  T
Q  213 ttttaacgcaacaaccacttttcattgccgaagaggtatgcata 256  Q
    |||||||||||| ||||||||||||||||||||||||| |||||    
T  19137692 ttttaacgcaaccaccacttttcattgccgaagaggtacgcata 19137649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 20368920 - 20369171
Alignment:
Q  8 gtgaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctag 107  Q
    ||||||||||||||||||||||||||| | ||||||| ||||||| |||||||| ||||| |  |  ||| ||||||||||||||||||||| |||||      
T  20368920 gtgaatgcagctcccatatttgagtttaatcaactaactactttactgctttggtacttagaagaattcaatggtttctatgctggaaatcacactctgc 20369019  T
Q  108 catgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaaca 207  Q
     ||||||||||||||| ||| ||||||||| | | |||||||||||||||||||| |||||||  ||||| |||||||||||||||| |||| |||||||    
T  20369020 tatgtccatctttgaggaaagttgatgtttgcaaatgtacaaagttgaatttgtttagaactcattctacaagaagctccaattttcaagatgacaaaca 20369119  T
Q  208 ctttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatatca 259  Q
    || |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  20369120 ctctgttttaaagcaacaaccacttttcattgctgaagaggtatgcatatca 20369171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 15898788 - 15898538
Alignment:
Q  10 gaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctagca 109  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||||||||||  || | | || |||| ||||||||||| |||||||||||||||||||    
T  15898788 gaatgaagctcccatatttgagtttaatcaactaagtactttattgctttggggctcagataaactcaatggtttctatgttggaaatcatactctagca 15898689  T
Q  110 tgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacact 209  Q
    || ||||||||||| |||||| ||||| | | ||||| ||| |||||||||||||||||||| ||||| | || |||||||||||||||| |  |||| |    
T  15898688 tgcccatctttgaggaaaattaatgttactggttgtataaatttgaatttgttcagaactctgtctacaaaaaactccaattttcgagatgaagaacaat 15898589  T
Q  210 ttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatatcat 260  Q
      |||| |||  | |||||||||||||||||||||||||||||||||||||    
T  15898588 cggtttcaacaaagcaaccacttttcattgccgaagaggtatgcatatcat 15898538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 13543866 - 13544114
Alignment:
Q  9 tgaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctagc 108  Q
    |||||| ||||||||||||||||||| | ||||||| |||||||| |||||    || | | || |||| ||||||||||||||||||||||||||||      
T  13543866 tgaatgaagctcccatatttgagtttaatcaactaactactttatggctttacggctcagataaactcaatggtttctatgctggaaatcatactctact 13543965  T
Q  109 atgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacac 208  Q
    ||||||||||||||| ||||||  |||| || | ||  ||||||||||||||||||||||| ||||||| | |  ||| ||||||| |||| | |||| |    
T  13543966 atgtccatctttgaggaaaattagtgttaccaaatgcgcaaagttgaatttgttcagaactatatctacaaaatactcaaattttcaagatgataaactc 13544065  T
Q  209 tttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatat 257  Q
    | ||||| |||  ||||||||||||||||||| ||||||||||||||||    
T  13544066 tctgtttcaactaaacaaccacttttcattgctgaagaggtatgcatat 13544114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 13655626 - 13655861
Alignment:
Q  13 tgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctagcatgt 112  Q
    |||||||||||||||||||||| | ||||||||||||||||| |||||| ||| ||  || |||| ||||||||||||||||||||| |||||   ||||    
T  13655626 tgcagctcccatatttgagtttaatcaactaagtactttattactttggcactcacctaaactcaatggtttctatgctggaaatcacactctgctatgt 13655725  T
Q  113 ccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacactttg 212  Q
    ||||||||||| || |||| ||| ||    |||||||||||||| |||||||||||||||            |||||||||| |||| ||||||||| ||    
T  13655726 ccatctttgaggaatattggtgtctctagatgtacaaagttgaaattgttcagaactcta------------tccaattttcaagatgacaaacactctg 13655813  T
Q  213 ttttaacgcaacaaccacttttcattgccgaagaggtatgcatatcat 260  Q
    ||| |||| ||||||||||||| ||||||||| |||||||||||||||    
T  13655814 tttcaacgaaacaaccactttttattgccgaacaggtatgcatatcat 13655861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 143 - 259
Target Start/End: Original strand, 13588359 - 13588475
Alignment:
Q  143 tgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacactttgttttaacgcaacaaccacttttcattgccg 242  Q
    |||||||||||||||||||| |||||||  ||||| ||||||||||||||| ||||| ||||||||| |||||||| ||||||||||||||||||||| |    
T  13588359 tgtacaaagttgaatttgtttagaactcattctacaagaagctccaattttggagatgacaaacactctgttttaaagcaacaaccacttttcattgctg 13588458  T
Q  243 aagaggtatgcatatca 259  Q
    |||||||||||||||||    
T  13588459 aagaggtatgcatatca 13588475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 158 - 278
Target Start/End: Original strand, 13421641 - 13421761
Alignment:
Q  158 ttgttcagaactctatctaccagaagctccaattttcgagatcacaaacactttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatat 257  Q
    ||||||||||| |||||||| | ||||||||||||||||||| ||| ||||| | |||||| |||||||||||||||| |||||||||||||| ||||||    
T  13421641 ttgttcagaacactatctacaacaagctccaattttcgagatgacagacactctcttttaatgcaacaaccacttttcgttgccgaagaggtacgcatat 13421740  T
Q  258 catgaaaacaccatgtctgta 278  Q
    | |||| ||||||||||||||    
T  13421741 cttgaacacaccatgtctgta 13421761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 16468022 - 16467913
Alignment:
Q  80 ggtttctatgctggaaatcatactctagcatgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctacca 179  Q
    |||||||||||||||||| ||||||||| |||||||||||||||  | ||| |||||| | ||||| ||||||||||| |||  |||||||||||||| |    
T  16468022 ggtttctatgctggaaattatactctagtatgtccatctttgagggacattcatgttttcaattgtgcaaagttgaatgtgtatagaactctatctacaa 16467923  T
Q  180 gaagctccaa 189  Q
    | ||||||||    
T  16467922 gcagctccaa 16467913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 13508206 - 13508281
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| |||||||||||||||||||||   ||||| || |  ||| |||||||||||||||||||||    
T  13508206 tgtttaaatatgttttaggtgattccaaacttggagctgttgaggatggtacaggcggatgctgacatgatattgc 13508281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 13515394 - 13515469
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| |||||||||||||||||||||   ||||| || |  ||| |||||||||||||||||||||    
T  13515394 tgtttaaatatgttttaggtgattccaaacttggagctgttgaggatggtacaggcggatgctgacatgatattgc 13515469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 13544574 - 13544649
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||| | ||||||||||||||||||||| | ||||  || || ||| |||||||||||||||||||||    
T  13544574 tgtttaaatatgatttaggtgattccaaacttggagactttgaagatggcacaggcggatgctgacatgatattgc 13544649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 13612001 - 13612076
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| |||||||||||||||||||||   ||||| || |  ||| |||||||||||||||||||||    
T  13612001 tgtttaaatatgttttaggtgattccaaacttggagctgttgaggatggtacaggcggatgctgacatgatattgc 13612076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 13686444 - 13686519
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| |||||||||||||||||||||   ||||| || |  ||| |||||||||||||||||||||    
T  13686444 tgtttaaatatgttttaggtgattccaaacttggagctgttgaggatggtacaggcggatgctgacatgatattgc 13686519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 19136723 - 19136648
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| |||||||||||||||||||||   ||||| || |  ||| |||||||||||||||||||||    
T  19136723 tgtttaaatatgttttaggtgattccaaacttggagctgttgaggatggtacaggcggatgctgacatgatattgc 19136648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 20488287 - 20488362
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| |||||||||||||||||||||   ||||| || |  ||| |||||||||||||||||||||    
T  20488287 tgtttaaatatgttttaggtgattccaaacttggagttgttgaggatggaacaggcggatgctgacatgatattgc 20488362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 13422344 - 13422379
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggag 359  Q
    ||||||||||||||||||||||||||||||||||||    
T  13422344 tgtttaaatatgttataggtgattccaaacttggag 13422379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 13588719 - 13588794
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| |||||||||||||||||||||   ||||| || |  ||| |||||||||||||| ||||||    
T  13588719 tgtttaaatatgttttaggtgattccaaacttggagtttttgaggatggaacaggcggatgctgacatgctattgc 13588794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 13651704 - 13651779
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| |||||||||||||||||||||   ||||| || |  ||| | |||||||||||||||||||    
T  13651704 tgtttaaatatgttttaggtgattccaaacttggagctgttgaggatggtacaggcagatgctgacatgatattgc 13651779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 13671515 - 13671590
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| |||||||||||||||||||||   ||||| || |  ||| |||||||||||||| ||||||    
T  13671515 tgtttaaatatgttttaggtgattccaaacttggagtttttgaggatggaacaggcggatgctgacatgctattgc 13671590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 20369406 - 20369481
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| |||||||||||||||||||||   ||||| || |  ||| |||||||||||||| ||||||    
T  20369406 tgtttaaatatgttttaggtgattccaaacttggagatgttgaggatggaacaggcggatgctgacatgctattgc 20369481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 20478479 - 20478554
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| |||||||||||||||||||||   ||||| || |  ||| |||||||||||||| ||||||    
T  20478479 tgtttaaatatgttttaggtgattccaaacttggagaagttgaggatggaccaggcggatgctgacatgctattgc 20478554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 15898269 - 15898194
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    ||||||||||| || ||||||||||||||||||||||  ||||| || |  ||| |  ||||||||||||||||||    
T  15898269 tgtttaaatattttttaggtgattccaaacttggaggagttgaggatggaacaggcaaatgctgacatgatattgc 15898194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 154; Significance: 1e-81; HSPs: 10)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 140315 - 140552
Alignment:
Q  13 tgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctagcatgt 112  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||  || |||| |||||||||||||||||||||||||||||||||     
T  140315 tgcagctcccatatttgagtttaatcaactaagtactttattgctttggaacttacctaaactcaatggtttctatgctggaaatcatactctagcatgc 140414  T
Q  113 ccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacactttg 212  Q
    |||||||||||||||||  |||| ||    |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||| || ||    
T  140415 ccatctttgagaaaaatcaatgtctctagatgtacaaagttgaaattgttcagaacactatctacaagaagctccaattttcgagatgacaaaccctctg 140514  T
Q  213 ttttaacgcaacaaccacttttcattgccgaagaggta 250  Q
    |||||||||||| |||||||||||||||||||||||||    
T  140515 ttttaacgcaaccaccacttttcattgccgaagaggta 140552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 8 - 278
Target Start/End: Original strand, 110390 - 110660
Alignment:
Q  8 gtgaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctag 107  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||| |||| |||| |||||||||||||||||||||||||||||    
T  110390 gtgaatgcagctcccatatttgagtttaaccaactaagtactttattgctttggagcttatacaaactcaatggtttctatgctggaaatcatactctag 110489  T
Q  108 catgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaaca 207  Q
    | || ||||||||||| || ||| ||||  |    |||||||||||||| |||||||  ||  ||||||| |||||||||||||||||||||  ||||||    
T  110490 cgtgcccatctttgaggaatattaatgtcgctagatgtacaaagttgaaattgttcacgacattatctacaagaagctccaattttcgagatggcaaaca 110589  T
Q  208 ctttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatatcatgaaaacaccatgtctgta 278  Q
    || |||||||||| ||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  110590 ctctgttttaacgaaacaaccgcttttcattgccgaagaggtacgcatatcttgaacacaccatgtctgta 110660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 168639 - 168890
Alignment:
Q  8 gtgaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctag 107  Q
    ||||||||||||||  ||||||| ||| | |||||||||||||||||||||||| ||| ||  || |||| |||||||||||||||||||||||||||      
T  168639 gtgaatgcagctccggtatttgaatttaatcaactaagtactttattgctttggcactcacctaaactcaatggtttctatgctggaaatcatactctgc 168738  T
Q  108 catgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaaca 207  Q
     ||||||||||||||| ||| ||||||||| | |||||||||||||||||||||| |||||||  ||||| ||||||||||||||| ||||| |||||||    
T  168739 tatgtccatctttgaggaaagttgatgtttacaattgtacaaagttgaatttgtttagaactcattctacaagaagctccaattttggagatgacaaaca 168838  T
Q  208 ctttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatatca 259  Q
    || |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  168839 ctctgttttaaagcaacaaccacttttcattgctgaagaggtatgcatatca 168890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 219231 - 219481
Alignment:
Q  9 tgaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctagc 108  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||| ||| ||   | |||| ||||||||||||||||||||| |||||       
T  219231 tgaatgcagctcccatatttgagtttaatcaactaagtactttattgctttgggactcacctgaactcaatggtttctatgctggaaatcacactctgct 219330  T
Q  109 atgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacac 208  Q
    |||||||||||||||| ||||| |||||| | | |||||||||||||||||||| |||||||  || || ||||||||||||||| ||||| ||||||||    
T  219331 atgtccatctttgagagaaattaatgtttgcaaatgtacaaagttgaatttgtttagaactcattcgacaagaagctccaattttggagatgacaaacac 219430  T
Q  209 tttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatatca 259  Q
    | |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  219431 tctgttttaaagcaacaaccacttttcattgctgaagaggtatgcatatca 219481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 145387 - 145622
Alignment:
Q  13 tgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctagcatgt 112  Q
    |||||||||||||||||||||| | ||||||||||||||||| |||||| ||| ||  || |||| ||||||||||||||||||||| |||||   ||||    
T  145387 tgcagctcccatatttgagtttaatcaactaagtactttattactttggcactcacctaaactcaatggtttctatgctggaaatcacactctgctatgt 145486  T
Q  113 ccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacactttg 212  Q
    ||||||||||| || |||| ||| ||    |||||||||||||| |||||||||||||||            |||||||||| |||| ||||||||| ||    
T  145487 ccatctttgaggaatattggtgtctctagatgtacaaagttgaaattgttcagaactcta------------tccaattttcaagatgacaaacactctg 145574  T
Q  213 ttttaacgcaacaaccacttttcattgccgaagaggtatgcatatcat 260  Q
    ||| |||| ||||||||||||| ||||||||| |||||||||||||||    
T  145575 tttcaacgaaacaaccactttttattgccgaacaggtatgcatatcat 145622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 57456 - 57704
Alignment:
Q  9 tgaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctagc 108  Q
    |||||| ||||||||||||||||||| | ||||||| |||||||  |||||  |||| | | || |||| |||||||||||||||||||||||||||       
T  57456 tgaatgaagctcccatatttgagtttaatcaactaactactttacggctttacaactcaaataaactcaatggtttctatgctggaaatcatactctgct 57555  T
Q  109 atgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacac 208  Q
    ||||||||||||||  ||| ||  |||| || | ||  ||||||||||||||||||||||||| || || | || ||| ||||||| |||| | |||| |    
T  57556 atgtccatctttgaagaaatttagtgttaccaaatgcgcaaagttgaatttgttcagaactctgtcgacaaaaaactcaaattttcaagatgataaactc 57655  T
Q  209 tttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatat 257  Q
    | ||||| |||  ||||||||||||||||||| ||||||||||||||||    
T  57656 tctgtttcaactaaacaaccacttttcattgctgaagaggtatgcatat 57704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 110877 - 110952
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| ||||||||||||||||||||||| ||||| || |  ||| |||||||||||||||||||||    
T  110877 tgtttaaatatgttttaggtgattccaaacttggaggcgttgaggatgggacaggcggatgctgacatgatattgc 110952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 141465 - 141540
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| |||||||||||||||||||||   ||||| || |  ||| | |||||||||||||||||||    
T  141465 tgtttaaatatgttttaggtgattccaaacttggagctgttgaggatggtacaggcagatgctgacatgatattgc 141540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 169129 - 169204
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| |||||||||||||||||||||   ||||| || |  ||| |||||||||||||| ||||||    
T  169129 tgtttaaatatgttttaggtgattccaaacttggagtttttgaggatggaacaggcggatgctgacatgctattgc 169204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 219710 - 219785
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| |||||||||||||||||||||   ||||| || |  ||| |||||||||||||| ||||||    
T  219710 tgtttaaatatgttttaggtgattccaaacttggagtttttgaggatggaacaggcggatgctgacatgctattgc 219785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 10 - 256
Target Start/End: Complemental strand, 38057434 - 38057188
Alignment:
Q  10 gaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctagca 109  Q
    |||||||||||||| |||||||||| | ||||| |||||||||||||||||||||||||| || |||| ||||||||||||| |||||||||||||   |    
T  38057434 gaatgcagctcccacatttgagtttaatcaactgagtactttattgctttggaacttacataaactcaatggtttctatgctagaaatcatactctgcta 38057335  T
Q  110 tgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacact 209  Q
    ||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||| | ||  || ||||||| |||| | |||||||    
T  38057334 tgtccatgtttgagtaaaattcatgttgccgattgtacaaagttgaatttgttcagaactctatctacaaaaaagtcaaattttcaagatgataaacact 38057235  T
Q  210 ttgttttaacgcaacaaccacttttcattgccgaagaggtatgcata 256  Q
     ||||| |||| |||||||||||||||||||||||||||||||||||    
T  38057234 ctgtttcaacgaaacaaccacttttcattgccgaagaggtatgcata 38057188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 22283643 - 22283390
Alignment:
Q  8 gtgaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctag 107  Q
    ||||||||||||||||||||||||||| | ||||||| ||||||||||||||||  |||| | || ||||   | ||||||||||||||||| |||||||    
T  22283643 gtgaatgcagctcccatatttgagtttaatcaactaactactttattgctttggggcttaaataaactcaacagcttctatgctggaaatcacactctag 22283544  T
Q  108 catgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaaca 207  Q
     ||||||||||||||  || |||||||||| | | ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||    
T  22283543 tatgtccatctttgacgaagattgatgtttacaaatgtacaaagttgaatttgttcagaactctatctacaagaagctccaattttcaagatgacaaaca 22283444  T
Q  208 ctttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatatcatg 261  Q
    || | |||| ||||| ||||||||||||||||| ||||||||||||||||||||    
T  22283443 ctctattttgacgcagcaaccacttttcattgctgaagaggtatgcatatcatg 22283390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 21814908 - 21815150
Alignment:
Q  8 gtgaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctag 107  Q
    |||||||||||| |||||||||||||| | || || |||| |||||||||||||  |||| | || |||| |||||||||||||||||||||||||||||    
T  21814908 gtgaatgcagctaccatatttgagtttaaccagcttagtattttattgctttggggcttatataaactcaatggtttctatgctggaaatcatactctag 21815007  T
Q  108 catgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaaca 207  Q
    |||| ||||||||||   |||||  ||||||| | | ||||||||||||||||||||||||||||            ||||||||||  ||| |||||||    
T  21815008 catgcccatctttgaaggaaattagtgtttccaaatctacaaagttgaatttgttcagaactcta------------tccaattttcatgataacaaaca 21815095  T
Q  208 ctttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatatcatga 262  Q
    || ||||| |||| | ||||||||||||||||| |||||||||||||||||||||    
T  21815096 ctctgtttcaacggagcaaccacttttcattgctgaagaggtatgcatatcatga 21815150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 398
Target Start/End: Original strand, 21815474 - 21815548
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattg 398  Q
    |||||||||||||| |||||||||||||||||||||   ||||| || |  ||| | ||||||||||||||||||    
T  21815474 tgtttaaatatgttttaggtgattccaaacttggagttgttgaggatggtacaggcagatgctgacatgatattg 21815548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 22283157 - 22283082
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||||||||||||||||||| | ||||  ||||  || |  ||| | |||||||||||||||||||    
T  22283157 tgtttaaatatgttataggtgattccaaacatagaggagttgaagatcgtacaggcagatgctgacatgatattgc 22283082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 27019 - 27270
Alignment:
Q  8 gtgaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctag 107  Q
    ||||||||||||||  ||||||| ||| | ||| |||||||||||||||||||| ||||||| || |||| ||||||||||||||||||||| |||||      
T  27019 gtgaatgcagctccggtatttgaatttaatcaattaagtactttattgctttgggacttacataaactcaatggtttctatgctggaaatcacactctgc 27118  T
Q  108 catgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaaca 207  Q
     ||||||||||||||| ||| ||||||||| | | |||||||||||||||||||| |||||||  ||||| |||||||||||||||| |||| |||||||    
T  27119 tatgtccatctttgaggaaagttgatgttttcaaatgtacaaagttgaatttgtttagaactcattctacaagaagctccaattttcaagatgacaaaca 27218  T
Q  208 ctttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatatca 259  Q
    || |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  27219 ctctgttttaaagcaacaaccacttttcattgctgaagaggtatgcatatca 27270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 79 - 259
Target Start/End: Original strand, 31205 - 31385
Alignment:
Q  79 tggtttctatgctggaaatcatactctagcatgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctacc 178  Q
    ||||||||||||||||||||| |||||   ||||||||||||||| ||| ||||||||| | | |||||||||||||||||||| |||||||  |||||     
T  31205 tggtttctatgctggaaatcacactctgctatgtccatctttgaggaaagttgatgttttcaaatgtacaaagttgaatttgtttagaactcattctaca 31304  T
Q  179 agaagctccaattttcgagatcacaaacactttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatatca 259  Q
    |||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  31305 agaagctccaattttcaagatgacaaacactctgttttaaagcaacaaccacttttcattgctgaagaggtatgcatatca 31385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 27467 - 27542
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    ||||||||||| || ||||||||| |||||||||||   ||||| || |  ||| |||||||||||||||||||||    
T  27467 tgtttaaatatattttaggtgatttcaaacttggagatgttgaggatggtacaggcggatgctgacatgatattgc 27542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 31582 - 31657
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    ||||||||||| || ||||||||| |||||||||||   ||||| || |  ||| |||||||||||||||||||||    
T  31582 tgtttaaatatattttaggtgatttcaaacttggagatgttgaggatggtacaggcggatgctgacatgatattgc 31657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 116239 - 116490
Alignment:
Q  8 gtgaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctag 107  Q
    ||||||||||||||||||||||||||| | ||||||| ||||||| ||||||||  |||||| ||  ||| ||||||||||||||||||||| |||||      
T  116239 gtgaatgcagctcccatatttgagtttaatcaactaactactttaatgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgc 116338  T
Q  108 catgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaaca 207  Q
     ||||||||||||||| ||| ||||||||| | | |||||||||||||||||||| |||||||  ||||| |||||||||||||||| |||| |||||||    
T  116339 tatgtccatctttgaggaaagttgatgttttcaaatgtacaaagttgaatttgtttagaactcattctacaagaagctccaattttcaagatgacaaaca 116438  T
Q  208 ctttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatatca 259  Q
    || |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  116439 ctctgttttaaagcaacaaccacttttcattgctgaagaggtatgcatatca 116490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 108423 - 108662
Alignment:
Q  9 tgaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctagc 108  Q
    |||||| || |||||||||||||||| | ||| ||||||||||||| |||||||||||| |  | |||| ||||||||||||||||||||||| |||||     
T  108423 tgaatgaagatcccatatttgagtttaatcaattaagtactttattactttggaacttatatgaactcaatggtttctatgctggaaatcatattctaga 108522  T
Q  109 atgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacac 208  Q
    |||||||||||||||| |||||  ||||||||   ||||||||||||| ||||||||||| |||            ||||||||||  ||| ||||||||    
T  108523 atgtccatctttgagagaaattagtgtttccggccgtacaaagttgaaattgttcagaacacta------------tccaattttcatgatgacaaacac 108610  T
Q  209 tttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatatcat 260  Q
    | ||||| |||| | ||||||||||||||||| |||||||||||||||||||    
T  108611 tctgtttcaacggagcaaccacttttcattgctgaagaggtatgcatatcat 108662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 324 - 398
Target Start/End: Original strand, 108999 - 109073
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattg 398  Q
    |||||||||||||| ||||||||||||||||||||||  ||||| || |  ||| ||||||||||||||||||||    
T  108999 tgtttaaatatgttttaggtgattccaaacttggaggagttgaggatggaacaggcggatgctgacatgatattg 109073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 116725 - 116800
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| |||||||||||||||||||||   ||||| || |  ||| |||||||||||||| ||||||    
T  116725 tgtttaaatatgttttaggtgattccaaacttggagtttttgaggatggaacaggcggatgctgacatgctattgc 116800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0783 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: scaffold0783
Description:

Target: scaffold0783; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 42 - 293
Alignment:
Q  8 gtgaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctag 107  Q
    ||||||||||||||||||||||||||| | ||||||| ||||||| |||||||| ||||| |  |  ||| ||||||||||||||||||||| |||||      
T  42 gtgaatgcagctcccatatttgagtttaatcaactaactactttactgctttggtacttagaagaattcaatggtttctatgctggaaatcacactctgc 141  T
Q  108 catgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaaca 207  Q
     ||||||||||||||| ||| ||||||||| | |  ||||||||||||||||||| |||||||  ||||| |||||||||||||||| |||| |||||||    
T  142 tatgtccatctttgaggaaagttgatgtttacaaaagtacaaagttgaatttgtttagaactcattctacaagaagctccaattttcaagatgacaaaca 241  T
Q  208 ctttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatatca 259  Q
    || |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  242 ctctgttttaaagcaacaaccacttttcattgctgaagaggtatgcatatca 293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0783; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 505 - 580
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| |||||||||||||||||||||   ||||| || |  ||| |||||||||||||| ||||||    
T  505 tgtttaaatatgttttaggtgattccaaacttggagtttttgaggatggaacaggcggatgctgacatgctattgc 580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 9 - 257
Target Start/End: Complemental strand, 40582 - 40334
Alignment:
Q  9 tgaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctagc 108  Q
    |||||| ||||||||||||||||||| | ||||||| |||||||| |||||    || | | || |||| |||||||||||||||||||||||||||       
T  40582 tgaatgaagctcccatatttgagtttaatcaactaactactttatggcttttcggctcagataaactcagtggtttctatgctggaaatcatactctgct 40483  T
Q  109 atgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacac 208  Q
    ||||||||||||||| ||| ||  |||| || | ||  ||||||||||||||||||||||||||||||| | || ||| | ||||| |||| | |||| |    
T  40482 atgtccatctttgaggaaatttagtgttaccaaatgcgcaaagttgaatttgttcagaactctatctacaaaaaactcaatttttcaagatgataaactc 40383  T
Q  209 tttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatat 257  Q
    | ||||| |||  ||||||||||||||||||| ||||||||||||||||    
T  40382 tctgtttcaactaaacaaccacttttcattgctgaagaggtatgcatat 40334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 39868 - 39793
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||| | |||||||||||||||||||||  |||||| || || ||| |||||||||||||||||||||    
T  39868 tgtttaaatatgatttaggtgattccaaacttggagatattgaggatggcacaggcggatgctgacatgatattgc 39793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 9 - 260
Target Start/End: Complemental strand, 20814399 - 20814160
Alignment:
Q  9 tgaatgcagctcccatatttgagtttgaacaactaagtactttattgctttggaacttacacaacctcactggtttctatgctggaaatcatactctagc 108  Q
    |||||| || |||||||||||||||| | ||||||||||||||||| ||||   ||| ||  || |||| |||||||||||||||||||||||||||||     
T  20814399 tgaatgaagatcccatatttgagtttaatcaactaagtactttattactttttcactcacctaaactcaatggtttctatgctggaaatcatactctaga 20814300  T
Q  109 atgtccatctttgagaaaaattgatgtttccgattgtacaaagttgaatttgttcagaactctatctaccagaagctccaattttcgagatcacaaacac 208  Q
    |||| |||| ||||| || ||| |||||| | | ||||||||||||||||||||||||||||||            ||||||||||  ||| ||||||||    
T  20814299 atgttcatcattgaggaacatttatgttttcaaatgtacaaagttgaatttgttcagaactcta------------tccaattttcatgatgacaaacac 20814212  T
Q  209 tttgttttaacgcaacaaccacttttcattgccgaagaggtatgcatatcat 260  Q
    | ||||| |||| | |||||||||||| |||  |||||||||||||||||||    
T  20814211 tctgtttcaacggagcaaccacttttctttgatgaagaggtatgcatatcat 20814160  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 324 - 398
Target Start/End: Complemental strand, 20813506 - 20813432
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattg 398  Q
    |||||||||||||| ||||||||||||||||||||||  ||||| || |  ||| ||||||||||||||||||||    
T  20813506 tgtttaaatatgttttaggtgattccaaacttggaggagttgaggatggaacaggcggatgctgacatgatattg 20813432  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 20792966 - 20792891
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggaggcattgagcatagcgcagacggatgctgacatgatattgc 399  Q
    |||||||||||||| ||||||||||||||||||||||  ||||  || || ||| | ||||||||| |||||||||    
T  20792966 tgtttaaatatgttttaggtgattccaaacttggaggtgttgaagatggcacaggctgatgctgacttgatattgc 20792891  T

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Target: scaffold0460 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 9276 - 9311
Alignment:
Q  324 tgtttaaatatgttataggtgattccaaacttggag 359  Q
    |||||||||||||| |||||||||||||||||||||    
T  9276 tgtttaaatatgttttaggtgattccaaacttggag 9311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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