View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10069_low_12 (Length: 233)
Name: NF10069_low_12
Description: NF10069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10069_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 9909893 - 9910120
Alignment:
| Q |
1 |
ctcgcatggttctctcccaatgttttgtgcttcctacaacaacaatagcaaccattgtgggaaccattattcttttgctcaagattggccacaaggtact |
100 |
Q |
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| T |
9909893 |
ctcgcatggttctctcccaatgttttgtgcttcctacaacaacaatagcaaccattgtgggaaccattattcttttgctcaagattggccacaaggtact |
9909992 |
T |
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| Q |
101 |
tttctcttttaaacttattatgcaaataacaacaatttcactttgaccactaaataaagtttgggtcatgctgacccatgtctcagaagttaagcaatta |
200 |
Q |
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| T |
9909993 |
tttctcttttaaacttattatgcaaataacaacaatttcactttgatcactaaataaagtttgggtcatgctgacctgtgtctctgaagttaagcaatta |
9910092 |
T |
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| Q |
201 |
aaaatagaaagaaaagacaaaattaaca |
228 |
Q |
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| T |
9910093 |
aaaatagaaagaaaagacaaaattaaca |
9910120 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 23991810 - 23991777
Alignment:
| Q |
188 |
agttaagcaattaaaaatagaaagaaaagacaaa |
221 |
Q |
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| T |
23991810 |
agttaagcaattaaaaatacaaagaaaagacaaa |
23991777 |
T |
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