View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10069_low_2 (Length: 496)
Name: NF10069_low_2
Description: NF10069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10069_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 5058859 - 5058383
Alignment:
| Q |
18 |
gacatgttagatggactttggtacagtatggttgaattgagttctgcagatgagtaatgatttttaggaccattagattgtgccatttgttcaacagaag |
117 |
Q |
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| T |
5058859 |
gacatgttagatggactttggtacagtatggttgaattgagttctgccgatgagtaatgatttttaggaccattagattgtgccatttgttcaacagaag |
5058760 |
T |
|
| Q |
118 |
aagctgatatagatctatgcatgaatgatggaacacatggtggtaacaattgtggtaacgacgaaccagaaaggagtcgaatcttttgatgaaaacttgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5058759 |
aagctgatatagatctatgcatgaatgatggaacacatggtggtaacaattgtggtaatgacgaaccagaaaggagtcgaatcttttgatgaaaacttgt |
5058660 |
T |
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| Q |
218 |
agtaagagatggatccataaca---tctttgctcccttgattgaagctcattggactgcaaccaccgtataacggtgtcatgatgccaccagaatttgga |
314 |
Q |
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| T |
5058659 |
agtaagagatggatccataacaacatctttgctcccttgattgaagctcattggactgcaaccaccgtataacggtgtcatgatgccgccagaatttgga |
5058560 |
T |
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| Q |
315 |
gggcatggtccaatgattggcttatatacaagaccttcagatggagacatgacaggaactaaccattggtttggtggtggtggagggtagacaatgtttg |
414 |
Q |
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| T |
5058559 |
gggcatggtccaatgattggcttatatacaagaccttcagatggagacatgacaggaactaaccattggtttggtggtggtggagggtagacaatgtttg |
5058460 |
T |
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| Q |
415 |
gagagtgtttggcattggaacttttatctgcagaggctaatgcaaggtttcctaaatgatgattgccataatttgaa |
491 |
Q |
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| T |
5058459 |
gagagtgtttggcattggaacttttatctgcagaggctaatgcaaggtttcctaaatgatgattgccataatttgaa |
5058383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 363 - 491
Target Start/End: Original strand, 5178634 - 5178762
Alignment:
| Q |
363 |
atgacaggaactaaccattggtttggtggtggtggagggtagacaatgtttggagagtgtttggcattggaacttttatctgcagaggctaatgcaaggt |
462 |
Q |
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||||||||||| ||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
5178634 |
atgacaggaacaaaccattggtttggtagtggcggaggatagacaatgcttggagagtgtttggcattggaaattttatctgcagaggctgatgcaagga |
5178733 |
T |
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| Q |
463 |
ttcctaaatgatgattgccataatttgaa |
491 |
Q |
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| T |
5178734 |
tccctaaatgatgattaccataacttgaa |
5178762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 236 - 341
Target Start/End: Original strand, 5178529 - 5178635
Alignment:
| Q |
236 |
aacatctttgctcccttgattgaagctcattggactgcaaccaccgtataac-ggtgtcatgatgccaccagaatttggagggcatggtccaatgattgg |
334 |
Q |
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| T |
5178529 |
aacatctttgcttcctgaactggagctcattgcactgcaagcatcgtataaatggtgtcatgaagccaccggcatttgaagggcaaggtctaatgattgg |
5178628 |
T |
|
| Q |
335 |
cttatat |
341 |
Q |
| |
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||||||| |
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| T |
5178629 |
cttatat |
5178635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 353
Target Start/End: Complemental strand, 5198069 - 5197896
Alignment:
| Q |
180 |
gaaccagaaaggagtcgaatcttttgatgaaaacttgtagtaagagatggatccataacatctttgctcccttgattgaagctcattggactgcaaccac |
279 |
Q |
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||||||||||||| ||| |||| |||||||||||| |||||| ||||||| | || ||||||||| ||| | |||||||||||| | ||||| ||| |
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| T |
5198069 |
gaaccagaaaggacgtgaacctttcaatgaaaacttgtggtaagacatggatctaaaatatctttgcttcctaaactgaagctcattgcagtgcaagcac |
5197970 |
T |
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| Q |
280 |
cgtataacggtgtcatgatgccaccagaatttggagggcatggtccaatgattggcttatatacaagaccttca |
353 |
Q |
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| T |
5197969 |
cttataatggtgccatgatgttgtcggtatttggagggcatggtctaacaattgatgtatatagaagaccttca |
5197896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 5178377 - 5178437
Alignment:
| Q |
75 |
tgatttttaggaccattagattgtgccatttgttcaacagaagaagctgatatagatctat |
135 |
Q |
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| T |
5178377 |
tgatttttaggacaattagattgtttcatttgctcaactgcggaagccgatatagatctat |
5178437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 363 - 491
Target Start/End: Original strand, 5175312 - 5175440
Alignment:
| Q |
363 |
atgacaggaactaaccattggtttggtggtggtggagggtagacaatgtttggagagtgtttggcattggaacttttatctgcagaggctaatgcaaggt |
462 |
Q |
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||||||||||| ||||||||||||||| |||| || | |||||||| ||||||| | || |||||||||| ||||||||||||||||| ||||||| |
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| T |
5175312 |
atgacaggaacaaaccattggtttggtagtggcagatgatagacaattcttggagactattcggcattggaatttttatctgcagaggctgatgcaagaa |
5175411 |
T |
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| Q |
463 |
ttcctaaatgatgattgccataatttgaa |
491 |
Q |
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||||||||||||| || |||||| ||||| |
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| T |
5175412 |
ttcctaaatgatggttaccataagttgaa |
5175440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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