View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10069_low_3 (Length: 485)
Name: NF10069_low_3
Description: NF10069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10069_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 263 - 467
Target Start/End: Original strand, 32490324 - 32490528
Alignment:
| Q |
263 |
accaaaaacttctttgttccatattctcagtctgtctttcaaagttttcaacttactattgagactaaatgggacaacttgttacatttttgttccaaca |
362 |
Q |
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| T |
32490324 |
accaaaaacttccttattccatattctcagtcagtctttcaaagttttcaacttaccattaagaataaatgggataactagttacatttgtgttccaaca |
32490423 |
T |
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| Q |
363 |
agatctcactatttccttgcagtcaaaatgaagtgcccccatcagttgaaatttaaattgtgaagcaaaaattgttgaagtaacttgaaattccaacaat |
462 |
Q |
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| T |
32490424 |
agatctcactatttccttgcagtcaaaatgaagtgcccacatcagttgaaatttgaattgtgaagcaaaaaatgttgaagtaacttgaaattccaacaat |
32490523 |
T |
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| Q |
463 |
agggg |
467 |
Q |
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||||| |
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| T |
32490524 |
agggg |
32490528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 32490237 - 32490321
Alignment:
| Q |
57 |
atgagagggaagggttgttagaactgcattgatgtcttatgtaatcaaatttgggattacttcttctacaagtaattattcttgc |
141 |
Q |
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| T |
32490237 |
atgagagggaagagttgtttgaactgcactgctgtcttatgtaatcaaatttgggattacctcttctacaagtaattattcttgc |
32490321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 17630588 - 17630702
Alignment:
| Q |
76 |
agaactgcattgatgtcttatgtaatcaaatttgggattacttcttctacaagtaattattcttgcaaatcaaagatagtacaaaataaagttgtataat |
175 |
Q |
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| T |
17630588 |
agaactgcatttatgtcatctgtgattagtttagggattacttcgtctacaagtaactggtcctgcaaaacaaagttagtacaaaataaagacttataat |
17630687 |
T |
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| Q |
176 |
aattaacaatgtgat |
190 |
Q |
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| T |
17630688 |
aattaacaatatgat |
17630702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 32019666 - 32019585
Alignment:
| Q |
109 |
gggattacttcttctacaagtaattattcttgcaaatcaaagatagtacaaaataaagttgtataataattaacaatgtgat |
190 |
Q |
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| T |
32019666 |
gggattacttcgtctacaagtaactggtcctgcaaaacaaagttagtacaaaataaagacttataataattaacaatatgat |
32019585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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