View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10069_low_4 (Length: 429)
Name: NF10069_low_4
Description: NF10069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10069_low_4 |
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| [»] scaffold0417 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Complemental strand, 27254707 - 27254306
Alignment:
| Q |
17 |
aatggatttgagagagttgagaaaagcagttgaggaggttgaagatgtcgatgacttagagaatgtttcatttgttcgtataatttgggttaattttgta |
116 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27254707 |
aatggatttgagagagttgagaaaagcagtcgaggaggttgaagatgtcgatgacttagagaatgtttcatttgttcgtataatttgggttaattttgta |
27254608 |
T |
|
| Q |
117 |
ggacaacacagatgtcgtgtgagttcccaatactctatttattcattgtgtagtttagaaattttattatttatattctaatgtgctgaggttatgtcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27254607 |
ggacaacacagatgtcgtgtgagttcccaatactctatttattcattgtgtagtttagaaattttattatttatattctaatgtgctgaggttatgtcaa |
27254508 |
T |
|
| Q |
217 |
attctgtaatatttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27254507 |
attctgtaatatttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctat |
27254408 |
T |
|
| Q |
317 |
tttggataaagttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacaggt |
416 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27254407 |
tttggataaacttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacatgt |
27254308 |
T |
|
| Q |
417 |
tc |
418 |
Q |
| |
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|| |
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|
| T |
27254307 |
tc |
27254306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 197 - 418
Target Start/End: Complemental strand, 27294647 - 27294429
Alignment:
| Q |
197 |
atgtgctgaggttatgtcaaattctgtaatatttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttggg |
296 |
Q |
| |
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|||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27294647 |
atgttctgaggttatgtcaatttctgtaat---tcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctgtaccatttggg |
27294551 |
T |
|
| Q |
297 |
actatggtattgacttctattttggataaagttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaagga |
396 |
Q |
| |
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| |||| ||||||||||||||||| |||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27294550 |
agcatggcattgacttctattttgggtaaacttgcaccggattgtggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaagga |
27294451 |
T |
|
| Q |
397 |
aaattccttggtacacaggttc |
418 |
Q |
| |
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|||||||||||||||| |||| |
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| T |
27294450 |
caattccttggtacacatgttc |
27294429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 27294837 - 27294713
Alignment:
| Q |
17 |
aatggatttgagagagttgagaaaagcagttgaggaggttgaagatgtcgatgacttagagaatgtttcatttgttcgtataatttgggttaattttgta |
116 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || |
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| T |
27294837 |
aatggatttgagtgagttgagaaaagctgttgaggaggttgaagatgtcgatgacttagagaatgcttcatttgttcgtataatttgggttaacttttta |
27294738 |
T |
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| Q |
117 |
ggacaacacagatgtcgtgtgagtt |
141 |
Q |
| |
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|||||||| |||||||||||||||| |
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| T |
27294737 |
ggacaacatagatgtcgtgtgagtt |
27294713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 228 - 419
Target Start/End: Original strand, 27405008 - 27405199
Alignment:
| Q |
228 |
tttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaag |
327 |
Q |
| |
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||||||||| ||||||| ||||||||| ||||| ||||| |||||||||| |||| |||| | |||| |||||||| | |||| ||| |||| ||| | |
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| T |
27405008 |
tttcaggctgttcctaggaagcgtttcaatgattttgtttcgaagaatggcgttggtttagcttttgcgactatgggaatgacctcttttttagatggac |
27405107 |
T |
|
| Q |
328 |
ttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacaggttct |
419 |
Q |
| |
|
|||| ||| || || |||||| ||||| ||| ||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| |
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| T |
27405108 |
ctgcagctgggtcagggttaggtgcagttggagaaacaagattaacacctgatttgtctactaaaaggaggattccttggtacacaagttct |
27405199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 419
Target Start/End: Original strand, 27425868 - 27426059
Alignment:
| Q |
228 |
tttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaag |
327 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||| |||| |||||| |||||| | ||| |||| | | ||| |
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| T |
27425868 |
tttcaggctgttcctagaaagcgtttcaatgatgttgtttcgaagaacggggttggtttagcatttgcacctatgggaatgagttctttaatagatgggc |
27425967 |
T |
|
| Q |
328 |
ttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacaggttct |
419 |
Q |
| |
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|||| | | |||||||||||| ||||||||| |||||||||| ||||| || ||||||||||||| ||||||||||||||| ||||| |
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| T |
27425968 |
ctgcagccgggtctggtttaggtgcagttggtgaaacaagattaacgcctgacttgtctactaaaaggaggattccttggtacacaagttct |
27426059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 27425702 - 27425764
Alignment:
| Q |
79 |
atgtttcatttgttcgtataatttgggttaattttgtaggacaacacagatgtcgtgtgagtt |
141 |
Q |
| |
|
|||||||||||||||||||||| |||||| || | ||||||||||||||||||||||||| |
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| T |
27425702 |
atgtttcatttgttcgtataatatgggttgataattcgggacaacacagatgtcgtgtgagtt |
27425764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 228 - 409
Target Start/End: Complemental strand, 12901 - 12720
Alignment:
| Q |
228 |
tttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaag |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| |||||| || ||||||| |||||||| |||||||| | |
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|
| T |
12901 |
tttcaggctattcctagaaagcgtttctatgatgttgttactaagaatggtgttggtttagcatttgtgagtatggtaatgacttcttttttggatggat |
12802 |
T |
|
| Q |
328 |
ttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggta |
409 |
Q |
| |
|
| || ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12801 |
ctccagctggttctggtttaggttcagttggtgaagcaagattaacacctgatttatctactaaaaggacaattccttggta |
12720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 13045 - 12980
Alignment:
| Q |
79 |
atgtttcatttgttcgtataatttgggttaattttgtaggacaacacagatgtcgtgtgagttccc |
144 |
Q |
| |
|
|||||||||||||||||||| | |||||| || | ||||||||||||||||||||||||||||| |
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| T |
13045 |
atgtttcatttgttcgtatattatgggttgataattcaggacaacacagatgtcgtgtgagttccc |
12980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 228 - 414
Target Start/End: Original strand, 13354343 - 13354529
Alignment:
| Q |
228 |
tttcaggctattcctagaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaag |
327 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |||| |||||| | ||| ||| |||||||| |||| |||| | |
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|
| T |
13354343 |
tttcaggctattcctagaaagcatttctatgatgttgttaagaagaatgggattggtttagcatttgtaagtatcgtaatgacttctgttttagatagac |
13354442 |
T |
|
| Q |
328 |
ttgcacctgattctggtttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttggtacacag |
414 |
Q |
| |
|
|||||||| |||||| |||| | || ||||| |||||| || |||| ||||| ||||||| ||||| ||||||||||||||||| |
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| T |
13354443 |
ctgcacctggctctggtctagggttagtcggtgatgcaagagtagcaccagatttgtctactataaggacaattccttggtacacag |
13354529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 406
Target Start/End: Original strand, 6792298 - 6792460
Alignment:
| Q |
244 |
gaaagcgtttctatgatgttgttacgaagaatggggttgctttaccatttgggactatggtattgacttctattttggataaagttgcacctgattctgg |
343 |
Q |
| |
|
|||||| ||| ||||||| |||||| |||||||||||||||||| || || || ||||||| |||||||| ||||||||| | ||||| || || ||| |
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|
| T |
6792298 |
gaaagcatttttatgatgatgttacaaagaatggggttgctttagcagatgagaatatggtaatgacttctgttttggatagacctgcacgtgcttatgg |
6792397 |
T |
|
| Q |
344 |
tttaggttatgttggtgaagcaagattaacacctgatttatctactaaaaggaaaattccttg |
406 |
Q |
| |
|
|||||||| | |||||||||||||||| | |||| |||| ||| ||| ||| | ||||||||| |
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|
| T |
6792398 |
tttaggttttattggtgaagcaagatttaaacctcatttgtcttctataagtacaattccttg |
6792460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 13353832 - 13353895
Alignment:
| Q |
78 |
aatgtttcatttgttcgtataatttgggttaattttgtaggacaacacagatgtcgtgtgagtt |
141 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
13353832 |
aatgtttcatttgttcgtatattatgggttaatatttcaggacaacacagatgtcgtgtgagtt |
13353895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 372
Target Start/End: Original strand, 6799525 - 6799637
Alignment:
| Q |
263 |
tgttacgaagaatggggttgctttaccatttgggactatggtattga---cttctattttggataaagttgcacctgattctggtttaggttatgttggt |
359 |
Q |
| |
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|||||| ||||||||||||| |||| || ||||||||||||| ||| ||||| ||||||||| | ||||||| || ||||||||||| | ||||| |
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| T |
6799525 |
tgttacaaagaatggggttggtttagcagatgggactatggtaatgacttcttcttttttggatagacctgcaccttcttatggtttaggttttattggt |
6799624 |
T |
|
| Q |
360 |
gaagcaagattaa |
372 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6799625 |
gaagcaagattaa |
6799637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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