View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10069_low_8 (Length: 360)
Name: NF10069_low_8
Description: NF10069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10069_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 6635745 - 6635409
Alignment:
| Q |
16 |
atatatccgaggatccatggctgcaatcctctctgtcctccaacactcatcatgtccacaaaacatcatctttcactttgtttgttcctcaaacacttca |
115 |
Q |
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| T |
6635745 |
atatatccgaggatccatggctgcaatcctctctgtcctccaacactcatcatgtccacaaaacatcatctttcactttgtttgttcctcaaacacttca |
6635646 |
T |
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| Q |
116 |
cttctccactccataatctcaaaatcattcccatacctcaaattccaagtctacaattttgatgattcaatcgtttcgggtttaatctcaacctcgattc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6635645 |
cttctccactccataatctcaaaatcattcccatacctcaaattccaagtctacaattttgatgattcaatcgtttcgggtttaatctcaacctcgattc |
6635546 |
T |
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| Q |
216 |
gatcagcacttgattgtcctctcaattatgcaagaagctatttggcaaatctaattccattatgtgtaagaaaagttgtgtacttggattcagaccttat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6635545 |
gatcagcacttgattgtcctctcaattatgcaagaagctatttggcaaatctaattccattatgtgtaagaaaagttgtgtacttggattcagaccttat |
6635446 |
T |
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| Q |
316 |
cttagttgatgatatcacaaaacttgcatcaacacca |
352 |
Q |
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| T |
6635445 |
cttagtggatgatatcacaaaacttgcatcaacacca |
6635409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 52164637 - 52164544
Alignment:
| Q |
16 |
atatatccgaggatccatggctgcaatcctctctgtcctccaacactcatcatgtccacaaaacatcatctttcactttgtttgttcctcaaac |
109 |
Q |
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| T |
52164637 |
atatatccgaggatccatggcagcaatcttatcaatcctccaacattcatcatgtccacaaaacatattcttccacttcgtttgttcatcaaac |
52164544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 52164453 - 52164413
Alignment:
| Q |
200 |
atctcaacctcgattcgatcagcacttgattgtcctctcaa |
240 |
Q |
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||||||||||| ||||| ||||| ||||||||||||||||| |
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| T |
52164453 |
atctcaacctccattcgttcagctcttgattgtcctctcaa |
52164413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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