View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10070_high_10 (Length: 524)
Name: NF10070_high_10
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_high_10 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Complemental strand, 28608945 - 28608455
Alignment:
| Q |
18 |
ccaacaaagatcatccaaatacgaaaattcatttttggcaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcacat |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28608945 |
ccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccacagagcaaggtgcactttgcatcacat |
28608846 |
T |
|
| Q |
118 |
tcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgcttgtggaatggaaggagaatcaagcttgtatgtttttc |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608845 |
tcaagtttatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttc |
28608746 |
T |
|
| Q |
218 |
gttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgcttca |
317 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608745 |
gttaactaaattgtatatgtcttcgtgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgcttca |
28608646 |
T |
|
| Q |
318 |
aatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaacaactgcac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28608645 |
aatttattatcaatactttctaactctatctgggatcttgtaagattttgtgttccagattggccactaggcttctccatatgagaagcaacaagtgcac |
28608546 |
T |
|
| Q |
418 |
catcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataac |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608545 |
catcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataac |
28608455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 509
Target Start/End: Original strand, 437957 - 438450
Alignment:
| Q |
16 |
caccaacaaagatcatccaaatacgaaaattcatttttggcaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcac |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | |||| || |||||||||| ||| || ||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
437957 |
caccaacaaagatcatacaaatacgaaaatttaaagttggtaatgacccaagatcacggtccacaaatattcccacagagcaaggtgcactttgcatcac |
438056 |
T |
|
| Q |
116 |
attcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgcttgtggaatggaaggagaatcaagcttgtatgtttt |
215 |
Q |
| |
|
||||||||| ||||||||| | ||| || ||||||||| | ||||||||| | ||||||||| ||||||||||||||||||||||| |||||| |||| |
|
|
| T |
438057 |
attcaagtttatatctttgtatgcagtattagttgtttcgagtgcaccttctgaacttagttgtttgtggaatggaaggagaatcaaacttgtacatttt |
438156 |
T |
|
| Q |
216 |
tcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgctt |
315 |
Q |
| |
|
|| ||| | | |||||||| ||||| |||||||||||||| | ||||||||||||| |||| ||||| |||||||||||||||||| ||| ||||| |
|
|
| T |
438157 |
tcattagccgagttgtatatatcttcgtgaatggttgcatagtttgacacaacatttagtgtttggactctaatagcatcatatgcctctttgaatgctt |
438256 |
T |
|
| Q |
316 |
caaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaacaactgc |
415 |
Q |
| |
|
|||| |||| ||| ||||||||||||| ||||||| |||||||||||||||| |||||||||||||| || ||||||||||||||||||| || |
|
|
| T |
438257 |
caaaggtattggtaatgctttctaactctagctgggattgtgtaagattttgtgttccagattggccactagatttttccatatgagaagcaacaagggc |
438356 |
T |
|
| Q |
416 |
accatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataact |
509 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| |||||| ||| |||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
438357 |
accaacacgtccaacgatttcaacaaggtaaaggccaaaaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataact |
438450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 16 - 500
Target Start/End: Complemental strand, 13652818 - 13652334
Alignment:
| Q |
16 |
caccaacaaagatcatccaaatacgaaaattcatttttggcaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcac |
115 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| |||||||| || || | ||||||||||||||||||||| | |||||| |||||||||||| |||||||||| |
|
|
| T |
13652818 |
caccaacaaatatcatacaaattcgaaagttcattttcggtaatgtcccaagattacgatcaacaaagattcccacagagcaaggtgcagtttgcatcac |
13652719 |
T |
|
| Q |
116 |
attcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgcttgtggaatggaaggagaatcaagcttgtatgtttt |
215 |
Q |
| |
|
||||| ||| ||||||||| | |||||| ||||||||| | ||||||| | ||||| || || ||||||||||| | ||||| |||||| |||||| |
|
|
| T |
13652718 |
attcaggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatcatgcttgtgtgtttt |
13652619 |
T |
|
| Q |
216 |
tcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgctt |
315 |
Q |
| |
|
|| ||| || |||| |||||||| || |||||||||||||| |||||||||||||| ||| ||||| | |||||| || ||||||| | ||||| |
|
|
| T |
13652618 |
tcattagctgaattatatatgtcctcgtgaatggttgcataggatgacacaacatttaaggttcggactctaacagcatcgtacgcctctccaaatgctt |
13652519 |
T |
|
| Q |
316 |
caaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaacaactgc |
415 |
Q |
| |
|
||||| |||||| ||| |||||| ||||| |||||| || ||||||||||||| || || ||| |||||||||| |||||||||| |||||||| ||| |
|
|
| T |
13652518 |
caaatgtattattaatgctttcttgctctacctgggaactggtaagattttgtgctccaggttgcacactaggcttatccatatgagcagcaacaagtgc |
13652419 |
T |
|
| Q |
416 |
accatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgagg |
500 |
Q |
| |
|
||| |||||| |||||||| ||||||||||| ||||| ||| |||||||||| |||||||||||||||||| | ||||||| |
|
|
| T |
13652418 |
accggtacgtcctttgagttcaataaggtaaagtgaaaaaacatgtataggggaaattctagtggcattgaaagactgaatgagg |
13652334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 18 - 508
Target Start/End: Complemental strand, 13660316 - 13659826
Alignment:
| Q |
18 |
ccaacaaagatcatccaaatacgaaaattcatttttggcaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcacat |
117 |
Q |
| |
|
|||| ||||||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||| | |||||| |||||||||| | |||||||||||| |
|
|
| T |
13660316 |
ccaataaagatcatacaaattcgaaagttcatttttgttattgacccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacat |
13660217 |
T |
|
| Q |
118 |
tcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgcttgtggaatggaaggagaatcaagcttgtatgtttttc |
217 |
Q |
| |
|
|| ||| ||||||||| | |||||| ||||||||| | ||||||| | ||||| || || ||||||||||| | ||||| |||||| ||||||| |
|
|
| T |
13660216 |
tctggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatcatgcttgtgcgtttttc |
13660117 |
T |
|
| Q |
218 |
gttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgcttca |
317 |
Q |
| |
|
||| | | || |||||||| || |||||||||| ||| |||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
13660116 |
attagcagagttatatatgtcctcatgaatggttgaataggatgacacaacatttaaggtttcgactctgacagcatcatatgcctctccaagtgcttca |
13660017 |
T |
|
| Q |
318 |
aatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaacaactgcac |
417 |
Q |
| |
|
||| |||||| ||| |||||| ||||| |||||||| ||||||||||| | || || |||| ||||||||| |||||||||| ||||||| ||||| |
|
|
| T |
13660016 |
aatgtattattaatgctttcttgctctacttgggatcttgtaagattttgcgctccaggttggttactaggcttatccatatgagcggcaacaagtgcac |
13659917 |
T |
|
| Q |
418 |
catcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataac |
508 |
Q |
| |
|
|| |||||| |||||||| |||||||||||| |||| ||| |||||||||| |||||| |||||||||||||||| |||||| ||||| |
|
|
| T |
13659916 |
cagtacgtcctttgagttcaataaggtaaagtgcgaaaacatgtataggggaaattctagtagcattgaaagattcaacgaggctgataac |
13659826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University