View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_high_13 (Length: 472)
Name: NF10070_high_13
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 11647884 - 11648120
Alignment:
| Q |
17 |
aagatttatgttgagatttcaatataaccagaagcaaagtacacaacaaaccaaaacaaactaatgttaataaagagaaacaaattaatgatttagtata |
116 |
Q |
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| T |
11647884 |
aagatttatgttgagacttcaatataaccaaaagcaaagtacacaacaaagcaaaacaaactaatgttaataaaga--accaaattagtgagtaagcata |
11647981 |
T |
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| Q |
117 |
atcaattaactaaaaacaattgaatgcatcccaatgtaatttcaattgacttattcactttctaaatctaccttttgagaaatcatgattaattgaatga |
216 |
Q |
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| T |
11647982 |
attaattaaccaaaagcatatgaatgcaactcactttaattacatttgacttattcactttataaatctaccttttgagaaatcatgattaattgaatga |
11648081 |
T |
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| Q |
217 |
atatatttgtaaaaacacttcaattcattatagtaaact |
255 |
Q |
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| T |
11648082 |
atatatttgtaaaaacatttcaattcattatagtaaact |
11648120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 324 - 472
Target Start/End: Original strand, 11648727 - 11648875
Alignment:
| Q |
324 |
gaaaattattttgcaatgagctgaagtattccaatcatgattcaataaagaataatcagggagagtgcaaaacactgatattcaattggatttaccttgt |
423 |
Q |
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| T |
11648727 |
gaaaattattttgcaataaaatgaagcattcaaatcatgattcaatgaagaataatcatggagagtgcaaaccactgatattcaattggatttaccttgt |
11648826 |
T |
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| Q |
424 |
tagctgcaagtgttctaaatttgatcttcatcttataaagataagcatc |
472 |
Q |
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| T |
11648827 |
tagttgcaagtgttctaaatttgatcttcatctcataaagataagcatc |
11648875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 260 - 463
Target Start/End: Original strand, 45637739 - 45637951
Alignment:
| Q |
260 |
gctagggtgtacaatagggtagtcaagactacttaacataaacttaatgcattctgaatcattagaaaattattttgcaatgagctgaagtattccaatc |
359 |
Q |
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| T |
45637739 |
gctagggtgtgcaatggggtagtcaagactacttaacataaactttatgcattccgaatcattagaaaattattttgcaatgaaatgaagcattcaaatc |
45637838 |
T |
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| Q |
360 |
atgattcaataaagaataatcagggagagtgcaaaacactgatattc---------aattggatttaccttgttagctgcaagtgttctaaatttgatct |
450 |
Q |
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| T |
45637839 |
atgactcaataaagaataatcaggaagagtgcaaaacactgatattcaaaaaaaaaaattggattaaccttgttagctgctagtgttcaaaatttgatct |
45637938 |
T |
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| Q |
451 |
tcatcttataaag |
463 |
Q |
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|||||| |||||| |
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| T |
45637939 |
tcatctcataaag |
45637951 |
T |
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