View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_high_16 (Length: 451)
Name: NF10070_high_16
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 11019604 - 11020039
Alignment:
| Q |
1 |
atatgaatttcacatgtaaaaatgttctcttcactataacccttgtctcattccttttaattggcaatgccactgctgagtctcacgatatacatgtcgt |
100 |
Q |
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| T |
11019604 |
atatgaatttcacatgtaaaaatgttctcttcactataacccttgtctcattccttttaattggcaatgccactgctgagtctcacgatatacatgtcgt |
11019703 |
T |
|
| Q |
101 |
acatcacgatctaaaacctgatctcttgaatttctgcnnnnnnncctccaaccctaccctttgtgaacaaaccgttcaaccacacttcctcaagagtgtt |
200 |
Q |
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| T |
11019704 |
acatcacgatctaaaacctgatctcttgaatttctgcaaaaaaacctccaaccctaccctttgtgaacaaaccgttcaaccacacttcctcaagagtgtt |
11019803 |
T |
|
| Q |
201 |
cttgatcccattgtggctcttggtttcgaagttgatgccacccttgtccaagcccaaaaagctcttgttgtcattggggagttacttaaaaaaccaggca |
300 |
Q |
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| T |
11019804 |
cttgatcccattgtggctcttggtttcgaagttgatgccacccttgtccaagcccaaaaagctcttgttgtcattggggagttacttaaaaaaccaggca |
11019903 |
T |
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| Q |
301 |
tctcaaaatcattcaaggattctcttgacatatgcaacgatcaatacggcatgatattggattctataaaactaaccaaagaagcaatcactaagcgctg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11019904 |
tctcaaaatcattcaaggattctcttgacatatgcaacgatcaatacggcatgatattggattctataaaactaaccaaagaagcaatcactaagcgctg |
11020003 |
T |
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| Q |
401 |
gttccatgaagccagatctcagttcagtgctgttat |
436 |
Q |
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| T |
11020004 |
gttccatgaagccagatctcagttcagtgctgttat |
11020039 |
T |
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