View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_high_20 (Length: 432)
Name: NF10070_high_20
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 415
Target Start/End: Original strand, 41429009 - 41429439
Alignment:
| Q |
7 |
gcacgttggaggtagatcccgattgaatcatattaaccaccgctgctgaatctagctcaaaaataattaagggaaggttttgagtctttgtaagctttat |
106 |
Q |
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| T |
41429009 |
gcacgttggaggtagatcccgattgaatcatattaaccactgctgctgaatctagctcaaaaataattaagggaaggttttgagtctttgtaagctttat |
41429108 |
T |
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| Q |
107 |
accaacccttggtgtccaaagttcagtccaaacaacttagcaacaaccaactctactnnnnnnnn-cctttcacaaatctaccattaaaatctcgaataa |
205 |
Q |
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| T |
41429109 |
accaacccttggtgtccaaagttcagtccaaacaacttagcaacaaccaactctactaaaaaaaaacctttcacaaatctaccattaaaatctcaaataa |
41429208 |
T |
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| Q |
206 |
ggtctacacgcgtagcactgctttaaaagaaccatcgacattaa---------------------gtttaaaccatctaattgccacctcttgcttggta |
284 |
Q |
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| T |
41429209 |
ggtctacacgcgtagcactgctttaaaagaaccatcgacattaattttaaaccaaccacgaggaggtttaaaccatctaattgccacctcttgcttggta |
41429308 |
T |
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| Q |
285 |
ggcatcaagtggcgcttatgaagaatgaaaacattatcaatggccttaccttgactgaggaattggaagaacaaagagttacatatggaagaagactgag |
384 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41429309 |
ggcatcaagtggcgcttatgaagagtgaaaacattatcaatggccttaccttgactgaggaattggaagaacaaagagttacatatggaagaagactgag |
41429408 |
T |
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| Q |
385 |
aaaaaacaagatcattctgatctttccaaat |
415 |
Q |
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| T |
41429409 |
aaaaaacaagatcattctgatctttccaaat |
41429439 |
T |
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