View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_high_21 (Length: 431)
Name: NF10070_high_21
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Complemental strand, 2755640 - 2755234
Alignment:
| Q |
11 |
cagagataatcaaacctaaaaccttgagataggcatactccaaggtctaaaaccaaccactataccaaccccaaataaattaatttatttatcaattata |
110 |
Q |
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| T |
2755640 |
cagagataatcaaacctaagaccttgagatgagcatacttcaaggtctaaaaccaaccactataccaaccccaaataaattaatttatttatcaattata |
2755541 |
T |
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| Q |
111 |
attaaatttgctggtaaattttgtaaaaagatcatccaatcaatctgagtttcttcagcgaaaatgagaacgttcttgtcacgccaaagagcaccgattg |
210 |
Q |
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| T |
2755540 |
attaaatttgctggtaaattttgtaaaaagatcatccaatcaatctgagtttctttagcgaaaatgtgaacgttcttgtcacgccaaagagcaccgattg |
2755441 |
T |
|
| Q |
211 |
aaattctaaataaagtaaaccaatcgacatttcttacatcgatatattttgagttaagatttcaattgaatcaacatgtaagcacaactcagttgatagc |
310 |
Q |
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| T |
2755440 |
aaattctaaataaagtaaaccaatcgacatttcctacatcgatatattttgagttaagatttcaattgagtcaacatataagcacaactcagttgatagc |
2755341 |
T |
|
| Q |
311 |
tgccataacaatgtagagactagatttctaacctctgacttttcactttgacccnnnnnnnttccaattgagccatgcatccgttccaatatgttcaaga |
410 |
Q |
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| T |
2755340 |
tgccagaacaatgtagagactggatttctaacctctgacttttcactttgaccaaaaaaaattccaattgagccatgcatccgttccaatatgttcaaga |
2755241 |
T |
|
| Q |
411 |
atttact |
417 |
Q |
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||||||| |
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| T |
2755240 |
atttact |
2755234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 27458989 - 27459043
Alignment:
| Q |
13 |
gagataatcaaacctaaaaccttgagataggcatactccaaggtctaaaaccaac |
67 |
Q |
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| T |
27458989 |
gagataatcaaacctaagaccttgagaaaagcatacttcaaggtctcaagccaac |
27459043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 43719224 - 43719269
Alignment:
| Q |
47 |
actccaaggtctaaaaccaaccactataccaaccccaaataaatta |
92 |
Q |
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| T |
43719224 |
actccaagatctcaaaccaaccactagaccaaccccaaatgaatta |
43719269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 15182686 - 15182658
Alignment:
| Q |
285 |
catgtaagcacaactcagttgatagctgc |
313 |
Q |
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| T |
15182686 |
catgtaagcacaactcagttgatagctgc |
15182658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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