View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10070_high_26 (Length: 398)
Name: NF10070_high_26
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_high_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 7795468 - 7795849
Alignment:
| Q |
1 |
gacagaactcataaaatatttgcgtaaagttaaaaattactaacactcaagttttatgttgattatgcctttttagagtcttttaaaaattaattacttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7795468 |
gacagaactcataaaatatttgcgtaaagttaaaaattactaacactcaagttttatgttgattatgcctttttagagtcttttaaaaattaattacttc |
7795567 |
T |
|
| Q |
101 |
acttcaaactcaatttcaaccaaattaaatccatttaaagtcaagttaggcttatcaatggttaggcaactatatgtagacagtgaccatatgcattaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7795568 |
acttcaaactcaatttcaaccaaattaaatccatttaaagtcaagttaggcttatcaatggttaggcaactatatgtagacagtgaccacatgcattaga |
7795667 |
T |
|
| Q |
201 |
ttctgattccatgccaagacttatgactagtttacaaccgaggaaatttgaacttcgtcctttgaaattacaaggctaagctcttaccaaggaactaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7795668 |
ttctgattccatgccaagacttatgactagtttacaaccgaggaaatttgaacttcgtcctttgaaattacaaggctaagctcttaccacggaactaaca |
7795767 |
T |
|
| Q |
301 |
ttttataaatagtaaacatgacatatttataagtagggggtgaaacaaaaaagagtattcacaatgacattgtctctgtgct |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7795768 |
ttttataaatagtaaacatgacatatttataagtagggggtgaaacaaaaaagagtattcacaatgacattgtctctgtgct |
7795849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 275
Target Start/End: Original strand, 48186115 - 48186144
Alignment:
| Q |
246 |
atttgaacttcgtcctttgaaattacaagg |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
48186115 |
atttgaacttcgtcctttgaaattacaagg |
48186144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University