View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_high_29 (Length: 352)
Name: NF10070_high_29
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 338
Target Start/End: Original strand, 5601425 - 5601754
Alignment:
| Q |
9 |
tcaagtagtttagtggttagaaattcatctcttaagatgaacaatgtcgtctttaccatttgagttaaactcatggagacacgctgaagaggttttaaaa |
108 |
Q |
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| T |
5601425 |
tcaagtaatttagtggttagaaattcatcttttaagatgaacaatgtcgtctttaccatttgagttaaactcatggagacacgcagaagaggttttaaaa |
5601524 |
T |
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| Q |
109 |
gggaaaagaaaacatcacaataatttactatttgaattattgttaattatttttaaaacaaaaacacatgtctttgcacttcatgattgcttgcacatat |
208 |
Q |
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| T |
5601525 |
gggaaaagaaaacatcacaataatttactatttgaattattgttaattatttttaaaacaaaaacacatgtctttgcacttcatgattgcttgcacatat |
5601624 |
T |
|
| Q |
209 |
atacactttgctgaatccacatttctccactctatcttcttgattaagtcttttcatgtgttctccctaaaactagaccttttgacatccgaccctgtct |
308 |
Q |
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| T |
5601625 |
atacactttgctgaatccacatttctccactctatcttcttgattaagtcttttcatgtgttctccctaaaactagaccttttgacatcctaccctgtct |
5601724 |
T |
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| Q |
309 |
ccctaaaaataatttcaacatgtccatatt |
338 |
Q |
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| T |
5601725 |
ccctaaaaataatttcaacatgtccatatt |
5601754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 3536366 - 3536337
Alignment:
| Q |
14 |
tagtttagtggttagaaattcatctcttaa |
43 |
Q |
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| T |
3536366 |
tagtttagtggttagaaattcatctcttaa |
3536337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 2657218 - 2657177
Alignment:
| Q |
8 |
gtcaagtagtttagtggttagaaattcatctcttaagatgaa |
49 |
Q |
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|||||||||||| ||||||||||||| |||| |||||||||| |
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| T |
2657218 |
gtcaagtagtttggtggttagaaattgatctgttaagatgaa |
2657177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 36862339 - 36862380
Alignment:
| Q |
8 |
gtcaagtagtttagtggttagaaattcatctcttaagatgaa |
49 |
Q |
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|||||||| |||||||| |||||||||| ||||||||||||| |
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| T |
36862339 |
gtcaagtattttagtggctagaaattcacctcttaagatgaa |
36862380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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