View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_high_3 (Length: 723)
Name: NF10070_high_3
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 595; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 19 - 708
Target Start/End: Original strand, 31820020 - 31820704
Alignment:
| Q |
19 |
cattcacatctgatcagagaccttttagtttgaattcgcagatggtaacttcaaatgcactagcttttcaacaaatgtggttttctcaaaatgttacctt |
118 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31820020 |
cattcacgtctgatcagagaccttttagtttgaattcgcagatggtaacttcaaatgcactagcttttcaacaaatgtggttttctcaaaatgttacctt |
31820119 |
T |
|
| Q |
119 |
taacatttgcggagatgaagcacaattttgcatatacacaactaagaagccgagcttgttgacaacaattttttatgtgatggagaaacataagattgat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31820120 |
taacatttgcggagatgaagcacaattttgcatatacacaactaagaagccgagcttgttgacaacaattttttatgtgatggagaaacataagattgat |
31820219 |
T |
|
| Q |
219 |
gtcatacatgccaacatcttgtgcaataataatggaaagagctgcatgatccaagcccatgtaagtttcaaattcaattcccactttatcgtgcattttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31820220 |
gtcatacatgccaacatcttgtgcaataataatgcaaagagctgcatgatccaagcccatgtaagtttcaaattcaattcccactttatcgtgcattttg |
31820319 |
T |
|
| Q |
319 |
ttttcttatattataccagcacttgtggagtaatttagaggaatctacgtgaatttcaatcaatagtatagagtaggtaagaaagtgtgtgttcgagaag |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
31820320 |
ttttcttatattataccagcacttgtggagtaatttaga-gaatctaagggaatttcaaccaatagcatagagtaggtaagaaagtgtgtgttcgagaag |
31820418 |
T |
|
| Q |
419 |
gtgttcttaccattattcaaagtttaaatctgtaacacagtatatagattaataaatttagttaatttttctttagaagaattgattaaaactctatttt |
518 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
31820419 |
gtgttcttaccattattcaaagtttaaatctgtaacatagcatatagattaataaatttagttaat-----tttagaagaatcgattaaaactctatttt |
31820513 |
T |
|
| Q |
519 |
tacgattccgttgtgagacacactcatttcttttgacaaaaaagaggtagatgtagtagaacttttgtgatttgtgtcggtgatgtaatgtgctcaaaat |
618 |
Q |
| |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31820514 |
tacgattccgttgtgagacacactctttttttttgacaaaaaagaggtagatgtagtagaacttttgtgatttgtgtcggagatgtaatgtgctcaaaat |
31820613 |
T |
|
| Q |
619 |
tagtgtgtttagggtttaagtctgaatgagtaacttaag-ttttctttttggtctcactattgacggaaatcaacgtgaaactttgatgtc |
708 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31820614 |
tagtgtgtttagggtttaagtctaaatgagtaacttaagtttttttttttggtctcactattgacggaaatcaacgtgaaactttggtgtc |
31820704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 290
Target Start/End: Original strand, 33485659 - 33485853
Alignment:
| Q |
96 |
tggttttctcaaaatgttacctttaacatttgcggagatgaagcacaattttgcatatacacaactaagaagccgagcttgttgacaacaattttttatg |
195 |
Q |
| |
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|||| ||||||||||||| || ||||| || || | |||||||||||||||||| | ||||||||||||| | | ||||| |||||| || | |
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| T |
33485659 |
tggtcttctcaaaatgttgtgttgaacatatgtggtggtgaagcacaattttgcatttgttcaactaagaagcctggtctcttgaccacaattgctttgg |
33485758 |
T |
|
| Q |
196 |
tgatggagaaacataagattgatgtcatacatgccaacatcttgtgcaataataatggaaagagctgcatgatccaagcccatgtaagtttcaaa |
290 |
Q |
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| T |
33485759 |
tgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
33485853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 290
Target Start/End: Original strand, 33498870 - 33499064
Alignment:
| Q |
96 |
tggttttctcaaaatgttacctttaacatttgcggagatgaagcacaattttgcatatacacaactaagaagccgagcttgttgacaacaattttttatg |
195 |
Q |
| |
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|||| ||||||||||||| || ||||| || || | |||||||||||||||||| | ||||||||||||| | | ||||| |||||| || | |
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| T |
33498870 |
tggtcttctcaaaatgttgtgttgaacatatgtggtggtgaagcacaattttgcatttgttcaactaagaagcctggtctcttgaccacaattgctttgg |
33498969 |
T |
|
| Q |
196 |
tgatggagaaacataagattgatgtcatacatgccaacatcttgtgcaataataatggaaagagctgcatgatccaagcccatgtaagtttcaaa |
290 |
Q |
| |
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| T |
33498970 |
tgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
33499064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 81 - 283
Target Start/End: Complemental strand, 12079498 - 12079296
Alignment:
| Q |
81 |
gcttttcaacaaatgtggttttctcaaaatgttacctttaacatttgcggagatgaagcacaattttgcatatacacaactaagaagccgagcttgttga |
180 |
Q |
| |
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|||||| | ||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| || | |||||| |
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| T |
12079498 |
gcttttgatcaaatgttgttttctctaaatgttacctttagtgtttgcggagatgaagcacaattttgcatatactcaaccaagagaccagacatgttga |
12079399 |
T |
|
| Q |
181 |
caacaattttttatgtgatggagaaacataagattgatgtcatacatg-ccaacatcttgtgcaataataatggaaagagctgcatgatccaagcccatg |
279 |
Q |
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||||| |||||||| |||||||||||||||||||| |||||| ||| ||||||||||| ||||| ||||||| || ||||||||||| |||||||||| |
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| T |
12079398 |
tcacaatcttttatgtaatggagaaacataagattgaagtcatatatgtccaacatcttgcgcaatgataatgg-aacagctgcatgattcaagcccatg |
12079300 |
T |
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| Q |
280 |
taag |
283 |
Q |
| |
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|||| |
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|
| T |
12079299 |
taag |
12079296 |
T |
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