View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_high_32 (Length: 336)
Name: NF10070_high_32
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 11326697 - 11326427
Alignment:
| Q |
17 |
agacaacatgtgagtatctttttactccaaattactgtgcagaatttgacaatgttggagtaatcaggactcctgatgagacacatatgttctcgttcct |
116 |
Q |
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| T |
11326697 |
agacaacatgtgagtatctttttactccaaattactgtgcagaatttgacaatgttggagtaatcacgactcttgatgagacacatatgttctcgttcct |
11326598 |
T |
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| Q |
117 |
gatatttagtcttgtggatcatacaaggccccgaagttcattgtcggaagcaaaactacattcaaggctatttctccaacatataatacttcctatttca |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11326597 |
gatatttagtcttgtggatcatacaaggccctgaagttcattttcggaagcaaaactacattcaaggctatttctccaacatataatacttcctatttca |
11326498 |
T |
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| Q |
217 |
attattgaatccataatttgcacatttcagtaataagtgatcataacattgttttggtggtttcttcatgctttt |
291 |
Q |
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| T |
11326497 |
attattgaatccataatttgcacatt----taataagtgatcataacattgttttggtggtttcttcatgctttt |
11326427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 11484718 - 11484448
Alignment:
| Q |
17 |
agacaacatgtgagtatctttttactccaaattactgtgcagaatttgacaatgttggagtaatcaggactcctgatgagacacatatgttctcgttcct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
11484718 |
agacaacatgtgagtatctttttactccaaattactgtgcagaatttgacaatgttggagtaatcacgactcttgatgagacacatatgttctcgttcct |
11484619 |
T |
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| Q |
117 |
gatatttagtcttgtggatcatacaaggccccgaagttcattgtcggaagcaaaactacattcaaggctatttctccaacatataatacttcctatttca |
216 |
Q |
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| T |
11484618 |
gatatttagtcttgtggatcatacaaggccctgaagttcattttcggaagcaaaactacattcaaggctatttctccaacatataatacttcctatttca |
11484519 |
T |
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| Q |
217 |
attattgaatccataatttgcacatttcagtaataagtgatcataacattgttttggtggtttcttcatgctttt |
291 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11484518 |
attattgaatccataatttgcacatt----taataagtgatcataacattgttttggtggtttcttcatgctttt |
11484448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 11326419 - 11326371
Alignment:
| Q |
276 |
gtttcttcatgcttttagtaataacataaggtgtgaatattgtctgtct |
324 |
Q |
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| T |
11326419 |
gtttcttcatgcttttagtaataacataaggtgtgagtattgtctgtct |
11326371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 11484440 - 11484392
Alignment:
| Q |
276 |
gtttcttcatgcttttagtaataacataaggtgtgaatattgtctgtct |
324 |
Q |
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| T |
11484440 |
gtttcttcatgcttttagtaataacataaggtgtgagtattgtctgtct |
11484392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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