View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_high_34 (Length: 328)
Name: NF10070_high_34
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 43052245 - 43052417
Alignment:
| Q |
18 |
tgtatttcacattgcaaccctgaatcgggagttgttgcagataataacaatttgagattttaaaagttgtctattgtttgtaagtttaactctgtcgtca |
117 |
Q |
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| T |
43052245 |
tgtatttcacattgcaaccctgaatcgggagttgttgcagataataacaatttgagattttaaaagttgtctattgtttgtaagtttaactctgtcgtca |
43052344 |
T |
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| Q |
118 |
atcataataaaatcttattgaatggcttgctaacaaaatgcattttcttgttccatggagatttattattagg |
190 |
Q |
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| T |
43052345 |
atcataataaaatcttattgaatggcttgcaaacaaaatgcattttcttgttccatggagatttattattagg |
43052417 |
T |
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Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 43052453 - 43052534
Alignment:
| Q |
237 |
tctaatgcagttgttgggaatttaatcataatgatcagtattcagtagccctcctccaaccacgtttagaaattcctctctg |
318 |
Q |
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| T |
43052453 |
tctaatgcagatgttaggaatttaatcataatgatcagtattcagtagccctcctccaaccacgtttagaaattcctctctg |
43052534 |
T |
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