View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_high_38 (Length: 284)
Name: NF10070_high_38
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_high_38 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 39092714 - 39092432
Alignment:
| Q |
1 |
tactctagtaaataatattcgagcaatcttgacccaataagagagagaatataagatagttaatccccctgagtctgaccatcaaactacccaaaagaaa |
100 |
Q |
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| T |
39092714 |
tactctagtaaataatattcgagcaatcttgacccaa-aagagagagaatataagatagttaatccccctgagtctgatcatcaaactacccaaaagaaa |
39092616 |
T |
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| Q |
101 |
gagtaccaaaagttgttcatggattccatgaaagtgatatccacaacaacagttcaagcaccaattgacaacaacaatcttaactcaagtaattatcaga |
200 |
Q |
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| T |
39092615 |
gagtaccaaaagttgttcatggattccatgaaagtgatatccacaacaacagttcaagcaccaattgacaacaacaatcttaactcaagtaattatcata |
39092516 |
T |
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| Q |
201 |
aaatcaatttaacaccatgggatctccgattccttccacttgaaaccatccaaacaggccttctttttcaccaacaacccattc |
284 |
Q |
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| T |
39092515 |
aaatcaatttaacaccatgggatctccgattccttccacttgaaaccatccaaaaaggccttctttttcaccaacaacccattc |
39092432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 116 - 274
Target Start/End: Complemental strand, 39083542 - 39083384
Alignment:
| Q |
116 |
ttcatggattccatgaaagtgatatccacaacaacagttcaagcaccaattgacaacaacaatcttaactcaagtaattatcagaaaatcaatttaacac |
215 |
Q |
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| T |
39083542 |
ttcatggattccattagtgtgatatccacaacaaaagttcaagcaccaattgacaacaataatctcaactcaactgattatcagataatcgaattaacac |
39083443 |
T |
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| Q |
216 |
catgggatctccgattccttccacttgaaaccatccaaacaggccttctttttcaccaa |
274 |
Q |
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| T |
39083442 |
catgggatcttcaatttctcccacttgaaaccatccaaaaaggccttcttttccaccaa |
39083384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 113 - 274
Target Start/End: Complemental strand, 39089197 - 39089033
Alignment:
| Q |
113 |
ttgttcatggattccatgaaagtgatatccacaacaacagttcaagcaccaattgacaacaacaatcttaactc---aagtaattatcagaaaatcaatt |
209 |
Q |
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| T |
39089197 |
ttgttcatggcttccatcaaagtgatatccacaacaacagttcaagcaccaattgaccacaataatctcaactcaagaagtgattatcgaataatcgatt |
39089098 |
T |
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| Q |
210 |
taacaccatgggatctccgattccttccacttgaaaccatccaaacaggccttctttttcaccaa |
274 |
Q |
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| T |
39089097 |
taacaccatgggatctccaatttctcttagttgaaaccattcaaaaaggcattcttttccaccaa |
39089033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 275
Target Start/End: Complemental strand, 39072024 - 39071922
Alignment:
| Q |
173 |
aacaatcttaactcaagtaattatcagaaaatcaatttaacaccatgggatctccgattccttccacttgaaaccatccaaacaggccttctttttcacc |
272 |
Q |
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| T |
39072024 |
aacaatctcaactcaagtgattatgaaaaaattgatctaacaccatgggatctccaattccttccacttgaaaccatccaaagaggccatcttttccacc |
39071925 |
T |
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| Q |
273 |
aac |
275 |
Q |
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||| |
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| T |
39071924 |
aac |
39071922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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