View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10070_high_45 (Length: 250)

Name: NF10070_high_45
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10070_high_45
NF10070_high_45
[»] scaffold0477 (2 HSPs)
scaffold0477 (1-127)||(2149-2275)
scaffold0477 (122-240)||(1059-1171)
[»] chr6 (2 HSPs)
chr6 (1-127)||(4651132-4651258)
chr6 (122-240)||(4650042-4650154)
[»] chr5 (2 HSPs)
chr5 (8-127)||(19082740-19082859)
chr5 (33-87)||(6531916-6531970)
[»] chr4 (3 HSPs)
chr4 (8-127)||(36757904-36758023)
chr4 (122-179)||(47503648-47503705)
chr4 (122-163)||(28336564-28336605)
[»] chr3 (2 HSPs)
chr3 (8-127)||(40109047-40109166)
chr3 (122-205)||(11483846-11483929)
[»] chr2 (1 HSPs)
chr2 (8-127)||(16148524-16148643)
[»] chr1 (2 HSPs)
chr1 (8-127)||(23303418-23303537)
chr1 (122-229)||(49129959-49130066)


Alignment Details
Target: scaffold0477 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 2275 - 2149
Alignment:
Q  1 ttcctataagttacttgccattacgttggtgtcgtgataaatttcaaagaccagttgaagtaaatatgatgcttagtgaaggaggacctattgagaatgt 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2275 ttccaataagttacttgccattacgttggtgtcgtgataaatttcaaagaccagttgaaataaatatgatgcttagtgaaggaggacctattgagaatgt 2176  T
Q  101 ggagaatgtagtagacttaattaaaaa 127  Q
    |||||||||||||||||||||||||||    
T  2175 ggagaatgtagtagacttaattaaaaa 2149  T

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Target: scaffold0477; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 1171 - 1059
Alignment:
Q  122 taaaaactaattaggtcaagcaattgcttagccctaattgctatgctaatttccctccaaagtacttaaccaaagagtgctttgcaagctaat-ggggac 220  Q
    ||||| |||||||||| ||||||||| |||||||||       |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  1171 taaaagctaattaggtaaagcaattgtttagcccta-------tgctaatttccctctaaagtacttaaccaaagagtgctttgcaagctaatgggggac 1079  T
Q  221 tcattaaatgctggtctgtg 240  Q
    ||||||||||||||| ||||    
T  1078 tcattaaatgctggtgtgtg 1059  T

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Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 4651258 - 4651132
Alignment:
Q  1 ttcctataagttacttgccattacgttggtgtcgtgataaatttcaaagaccagttgaagtaaatatgatgcttagtgaaggaggacctattgagaatgt 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4651258 ttccaataagttacttgccattacgttggtgtcgtgataaatttcaaagaccagttgaaataaatatgatgcttagtgaaggaggacctattgagaatgt 4651159  T
Q  101 ggagaatgtagtagacttaattaaaaa 127  Q
    |||||||||||||||||||||||||||    
T  4651158 ggagaatgtagtagacttaattaaaaa 4651132  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 4650154 - 4650042
Alignment:
Q  122 taaaaactaattaggtcaagcaattgcttagccctaattgctatgctaatttccctccaaagtacttaaccaaagagtgctttgcaagctaat-ggggac 220  Q
    ||||| |||||||||| ||||||||| |||||||||       |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  4650154 taaaagctaattaggtaaagcaattgtttagcccta-------tgctaatttccctctaaagtacttaaccaaagagtgctttgcaagctaatgggggac 4650062  T
Q  221 tcattaaatgctggtctgtg 240  Q
    ||||||||||||||| ||||    
T  4650061 tcattaaatgctggtgtgtg 4650042  T

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Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 19082859 - 19082740
Alignment:
Q  8 aagttacttgccattacgttggtgtcgtgataaatttcaaagaccagttgaagtaaatatgatgcttagtgaaggaggacctattgagaatgtggagaat 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19082859 aagttacttgccattacgttggtgtcgtgatgaatttcaaagaccggttgaagtaaatatgatgcttagtgaaggagaacctattgagaatgtggagaat 19082760  T
Q  108 gtagtagacttaattaaaaa 127  Q
      ||||||||||||||||||    
T  19082759 acagtagacttaattaaaaa 19082740  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 6531916 - 6531970
Alignment:
Q  33 cgtgataaatttcaaagaccagttgaagtaaatatgatgcttagtgaaggaggac 87  Q
    |||||| ||||||||||||||||  |||||||| | ||||||||||||| |||||    
T  6531916 cgtgatgaatttcaaagaccagtcaaagtaaatgtcatgcttagtgaagtaggac 6531970  T

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Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 36758023 - 36757904
Alignment:
Q  8 aagttacttgccattacgttggtgtcgtgataaatttcaaagaccagttgaagtaaatatgatgcttagtgaaggaggacctattgagaatgtggagaat 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36758023 aagttacttgccattacgttggtgtcgtgatgaatttcaaagaccggttgaagtaaatatgatgcttagtgaaggagaacctattgagaatgtggagaat 36757924  T
Q  108 gtagtagacttaattaaaaa 127  Q
      ||||||||||||||||||    
T  36757923 acagtagacttaattaaaaa 36757904  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 47503648 - 47503705
Alignment:
Q  122 taaaaactaattaggtcaagcaattgcttagccctaattgctatgctaatttccctcc 179  Q
    ||||| ||||||| |||||||||||||||| |||||||||||||| ||||||||||||    
T  47503648 taaaagctaattaagtcaagcaattgcttaaccctaattgctatgataatttccctcc 47503705  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 28336605 - 28336564
Alignment:
Q  122 taaaaactaattaggtcaagcaattgcttagccctaattgct 163  Q
    ||||| |||||||||||||||||||||||| |||||||||||    
T  28336605 taaaagctaattaggtcaagcaattgcttaaccctaattgct 28336564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 40109166 - 40109047
Alignment:
Q  8 aagttacttgccattacgttggtgtcgtgataaatttcaaagaccagttgaagtaaatatgatgcttagtgaaggaggacctattgagaatgtggagaat 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40109166 aagttacttgccattacgttggtgtcgtgatgaatttcaaagaccggttgaagtaaatatgatgcttagtgaaggagaacctattgagaatgtggagaat 40109067  T
Q  108 gtagtagacttaattaaaaa 127  Q
      ||||||||||||||||||    
T  40109066 acagtagacttaattaaaaa 40109047  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 11483929 - 11483846
Alignment:
Q  122 taaaaactaattaggtcaagcaattgcttagccctaattgctatgctaatttccctccaaagtacttaaccaaagagtgctttg 205  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11483929 taaaagctaattaggtcaagcaattgcttagccctaattgctatgctaatttccctccaaagtacttaaccaaagagtgttttg 11483846  T

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Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 16148643 - 16148524
Alignment:
Q  8 aagttacttgccattacgttggtgtcgtgataaatttcaaagaccagttgaagtaaatatgatgcttagtgaaggaggacctattgagaatgtggagaat 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16148643 aagttacttgccattacgttggtgtcgtgatgaatttcaaagaccggttgaagtaaatatgatgcttagtgaaggagggcctattgagaatgtggagaat 16148544  T
Q  108 gtagtagacttaattaaaaa 127  Q
      ||| ||||||||||||||    
T  16148543 acagtggacttaattaaaaa 16148524  T

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Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 23303418 - 23303537
Alignment:
Q  8 aagttacttgccattacgttggtgtcgtgataaatttcaaagaccagttgaagtaaatatgatgcttagtgaaggaggacctattgagaatgtggagaat 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  23303418 aagttacttgccattacgttggtgtcgtgatgaatttcaaagaccggttgaagtaaatatgatgcttagtgaaggagggcctattgagaatatggagaat 23303517  T
Q  108 gtagtagacttaattaaaaa 127  Q
      ||||||||||||||||||    
T  23303518 acagtagacttaattaaaaa 23303537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 49130066 - 49129959
Alignment:
Q  122 taaaaactaattaggtcaagcaattgcttagccctaattgctatgctaatttccctccaaagtacttaaccaaagagtgctttgcaagctaatggggact 221  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||  ||| ||||||||||||| ||||||||||||||| |||    
T  49130066 taaaagctaattaggtcaagcaattgcttagccctaattactatgctaatttccctcctaaacactaaaccaaagagtgcattgcaagctaatgggaact 49129967  T
Q  222 cattaaat 229  Q
    ||||||||    
T  49129966 cattaaat 49129959  T

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