View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_high_55 (Length: 236)
Name: NF10070_high_55
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_high_55 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 10075134 - 10074926
Alignment:
| Q |
13 |
agagacatatttttcagaagagatggatgccgcagcgcaaggttgtagaattcttctttgtcaatcttcccatcatgatttctgtccgcatcttcaaatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10075134 |
agagacatatttttcagaagagatggatgccgcagcgcaaggttgtagaattcttctttgtcaatcttcccatcatgatttctgtccgcatcttcaaatg |
10075035 |
T |
|
| Q |
113 |
tctgaaacatcatagcaaatgttagcaatagctctacaaacaagatcatgatcgtacaataatggtttgggcttgtgaaaaatctcgaagccaacctata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10075034 |
tctgaaacatcatagcaaatgttagcaatagctctacaaacaagattatgatcgtacaataatggtttgggcttgtgaaaaatctcgaagccaacctata |
10074935 |
T |
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| Q |
213 |
catattttg |
221 |
Q |
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||||||||| |
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| T |
10074934 |
catattttg |
10074926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 10032416 - 10032271
Alignment:
| Q |
13 |
agagacatatttttcagaagagatggatgccgcagcgcaaggttgtagaattcttctttgtcaatcttcccatcatgatttctgtccgcatcttcaaatg |
112 |
Q |
| |
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|||| ||||||||||| ||| |||| ||| ||| |||||||| | |||||||| ||||||||||||||||||||||| ||||| | || ||||| | |
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| T |
10032416 |
agagtcatatttttcaaaagcgatgtttgctgcatagcaaggttcttccattcttctctgtcaatcttcccatcatgatttgtgtccacttcctcaaacg |
10032317 |
T |
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| Q |
113 |
tctgaaacatcatagcaaatgttagcaatagctctacaaacaagat |
158 |
Q |
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||||||||||||| | ||||||||||||||||||| | ||||||| |
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| T |
10032316 |
tctgaaacatcattgataatgttagcaatagctctatagacaagat |
10032271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 10054328 - 10054183
Alignment:
| Q |
13 |
agagacatatttttcagaagagatggatgccgcagcgcaaggttgtagaattcttctttgtcaatcttcccatcatgatttctgtccgcatcttcaaatg |
112 |
Q |
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|||| ||||||||||| ||| |||| ||| ||| |||||||| | |||||||| ||||||||||||||||||||||| ||||| | || ||||| | |
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| T |
10054328 |
agagtcatatttttcaaaagcgatgtttgctgcatagcaaggttcttccattcttctctgtcaatcttcccatcatgatttgtgtccacttcctcaaacg |
10054229 |
T |
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| Q |
113 |
tctgaaacatcatagcaaatgttagcaatagctctacaaacaagat |
158 |
Q |
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||||||||||||| | ||||||||||||||||||| | ||||||| |
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| T |
10054228 |
tctgaaacatcattgataatgttagcaatagctctatagacaagat |
10054183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 10064417 - 10064306
Alignment:
| Q |
13 |
agagacatatttttcagaagagatggatgccgcagcgcaaggttgtagaattcttctttgtcaatcttcccatcatgatttctgtccgcatcttcaaatg |
112 |
Q |
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|||| ||||||| ||||||| ||||| ||| ||| |||||||| | |||||||||||||||||||||||||||||||| ||||| | || ||||||| |
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| T |
10064417 |
agagtcatatttgtcagaagggatggctgctgcatggcaaggttcttccattcttctttgtcaatcttcccatcatgatttgtgtccacttcctcaaatg |
10064318 |
T |
|
| Q |
113 |
tctgaaacatca |
124 |
Q |
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|||||||||||| |
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|
| T |
10064317 |
tctgaaacatca |
10064306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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