View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10070_low_1 (Length: 1044)

Name: NF10070_low_1
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10070_low_1
NF10070_low_1
[»] chr5 (27 HSPs)
chr5 (541-999)||(30618746-30619194)
chr5 (537-785)||(35335682-35335931)
chr5 (599-750)||(36340311-36340463)
chr5 (572-815)||(29359868-29360106)
chr5 (601-815)||(10016389-10016597)
chr5 (854-976)||(36340126-36340248)
chr5 (880-1033)||(35335427-35335580)
chr5 (457-608)||(6660409-6660560)
chr5 (890-1005)||(10016216-10016331)
chr5 (275-390)||(35336082-35336197)
chr5 (890-969)||(38366165-38366244)
chr5 (897-1005)||(6660080-6660188)
chr5 (275-390)||(36340652-36340767)
chr5 (765-838)||(17220351-17220425)
chr5 (315-411)||(6660605-6660700)
chr5 (294-397)||(38366575-38366677)
chr5 (541-618)||(17220158-17220235)
chr5 (765-822)||(43451774-43451831)
chr5 (457-589)||(38366384-38366516)
chr5 (327-390)||(30619339-30619402)
chr5 (291-377)||(38986741-38986827)
chr5 (924-1005)||(6659978-6660059)
chr5 (457-517)||(29359758-29359818)
chr5 (922-969)||(17220492-17220539)
chr5 (653-734)||(17220261-17220345)
chr5 (226-256)||(35336220-35336250)
chr5 (457-487)||(36340556-36340586)
[»] chr4 (29 HSPs)
chr4 (457-822)||(3425565-3425932)
chr4 (604-783)||(26938851-26939030)
chr4 (649-815)||(41361064-41361223)
chr4 (691-815)||(5955599-5955723)
chr4 (891-969)||(3425998-3426076)
chr4 (880-1033)||(18542976-18543129)
chr4 (294-608)||(30843083-30843395)
chr4 (765-836)||(42457771-42457842)
chr4 (881-969)||(47476154-47476242)
chr4 (457-608)||(47476465-47476616)
chr4 (897-1033)||(5955800-5955936)
chr4 (290-390)||(26939224-26939324)
chr4 (881-969)||(30843621-30843709)
chr4 (294-414)||(43702707-43702826)
chr4 (890-969)||(43703232-43703311)
chr4 (765-840)||(902915-902991)
chr4 (881-969)||(26938657-26938744)
chr4 (457-517)||(41362225-41362285)
chr4 (291-394)||(3425400-3425503)
chr4 (457-608)||(18542590-18542741)
chr4 (855-894)||(26938755-26938794)
chr4 (457-608)||(43702868-43703018)
chr4 (567-617)||(903108-903158)
chr4 (327-393)||(18542461-18542527)
chr4 (224-256)||(4049231-4049263)
chr4 (805-840)||(23148554-23148589)
chr4 (225-256)||(26939363-26939394)
chr4 (897-969)||(41360943-41361011)
chr4 (767-815)||(18542852-18542898)
[»] chr2 (4 HSPs)
chr2 (457-969)||(3406766-3407251)
chr2 (448-608)||(34319117-34319276)
chr2 (765-815)||(20990721-20990771)
chr2 (341-414)||(34319011-34319084)
[»] chr3 (17 HSPs)
chr3 (460-785)||(42724398-42724722)
chr3 (457-815)||(38341691-38342042)
chr3 (457-815)||(8601797-8602148)
chr3 (605-814)||(46808266-46808468)
chr3 (691-815)||(3529240-3529365)
chr3 (457-608)||(39349625-39349776)
chr3 (890-1020)||(39349280-39349410)
chr3 (457-608)||(43726064-43726215)
chr3 (897-976)||(3529421-3529500)
chr3 (890-976)||(43725751-43725837)
chr3 (857-929)||(36726758-36726830)
chr3 (275-390)||(51898793-51898907)
chr3 (897-969)||(8605771-8605843)
chr3 (315-414)||(39349818-39349916)
chr3 (329-390)||(42724791-42724852)
chr3 (538-608)||(26981528-26981598)
chr3 (585-644)||(3526450-3526509)
[»] chr8 (22 HSPs)
chr8 (538-785)||(42279205-42279453)
chr8 (572-815)||(34660668-34660904)
chr8 (572-815)||(44997325-44997561)
chr8 (457-815)||(5344722-5345072)
chr8 (605-815)||(36833260-36833464)
chr8 (691-815)||(43096999-43097124)
chr8 (880-1005)||(42278978-42279103)
chr8 (538-734)||(14088764-14088962)
chr8 (890-1033)||(40524171-40524314)
chr8 (765-840)||(14088967-14089042)
chr8 (897-973)||(5344594-5344670)
chr8 (897-969)||(34660981-34661053)
chr8 (890-1033)||(14089113-14089256)
chr8 (457-603)||(40521773-40521919)
chr8 (891-969)||(36833144-36833222)
chr8 (457-517)||(43097177-43097237)
chr8 (342-394)||(26221028-26221080)
chr8 (897-976)||(43096855-43096934)
chr8 (324-390)||(42279596-42279662)
chr8 (330-411)||(40521648-40521728)
chr8 (457-517)||(34660554-34660613)
chr8 (457-511)||(44997245-44997299)
[»] chr1 (20 HSPs)
chr1 (457-815)||(26114799-26115150)
chr1 (457-815)||(50547408-50547759)
chr1 (572-815)||(43626754-43626990)
chr1 (601-815)||(35067121-35067329)
chr1 (315-744)||(10887599-10888029)
chr1 (881-1005)||(10886970-10887094)
chr1 (457-608)||(42093250-42093401)
chr1 (457-608)||(32295876-32296027)
chr1 (890-1005)||(42093636-42093751)
chr1 (890-971)||(32296241-32296322)
chr1 (897-973)||(28792416-28792492)
chr1 (890-976)||(26115208-26115294)
chr1 (316-608)||(28791904-28792194)
chr1 (457-591)||(35067322-35067456)
chr1 (897-967)||(50547285-50547355)
chr1 (736-785)||(10887183-10887232)
chr1 (316-413)||(32295740-32295836)
chr1 (353-419)||(42093181-42093247)
chr1 (882-969)||(43627037-43627124)
chr1 (228-257)||(3470175-3470204)
[»] chr7 (16 HSPs)
chr7 (538-815)||(14966038-14966308)
chr7 (538-815)||(15395510-15395780)
chr7 (601-815)||(39974880-39975087)
chr7 (457-815)||(46270050-46270402)
chr7 (461-815)||(47249149-47249486)
chr7 (901-1005)||(46270471-46270575)
chr7 (897-976)||(14965883-14965962)
chr7 (897-976)||(15395355-15395434)
chr7 (897-976)||(39974736-39974815)
chr7 (457-815)||(31187285-31187621)
chr7 (897-976)||(47248982-47249061)
chr7 (765-840)||(28245835-28245911)
chr7 (514-617)||(28246033-28246136)
chr7 (457-517)||(14966295-14966355)
chr7 (457-517)||(15395767-15395827)
chr7 (457-517)||(39975154-39975214)
[»] chr6 (7 HSPs)
chr6 (653-819)||(6940902-6941068)
chr6 (290-414)||(6941257-6941380)
chr6 (900-969)||(3141960-3142029)
chr6 (457-591)||(6941115-6941249)
chr6 (854-954)||(13286180-13286292)
chr6 (897-972)||(6940748-6940823)
chr6 (856-894)||(6940849-6940887)
[»] scaffold0524 (1 HSPs)
scaffold0524 (881-954)||(5969-6042)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 7e-98; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 541 - 999
Target Start/End: Complemental strand, 30619194 - 30618746
Alignment:
Q  541 ggattatattatccggagtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagacatat 640  Q
    ||||||||| ||| ||| |||| ||  ||| |||||||||||||||||||| |||||||||||||||||||||||||| | || ||||||| ||||||||    
T  30619194 ggattatataatctggactgcatcaggacagaggcagaagccatctgttttggctgagcctctgttttggcgcattttgcttgcttccaaacagacatat 30619095  T
Q  641 catgccggtgacatgttctaacagtaaatcaaacttat-aacattaaaattatcaacacaacataattttgaaacataacattaatcaaatataattaaa 739  Q
    ||| ||| | |||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||  |||| |||||||||||| ||||||||||    
T  30619094 cataccgctaacatgttctaacagtaaatcgaacttataaacattaaaataatcaacacaacataattttcgaacaaaacattaatcaattataattaaa 30618995  T
Q  740 aattatccaagattacgtaacattaaaaattatccaaatgttacatcactaaaaattatccaagatattcaaacataacataattaaaaagtacaatcat 839  Q
    |||||||||||||||| |||||||||||||||||||  |||||||| | | ||||  || ||| || |||||||||||   |  |||||  ||||||       
T  30618994 aattatccaagattacataacattaaaaattatccaggtgttacataattcaaaagcattcaaaatgttcaaacataa---acataaaa--tacaat--- 30618903  T
Q  840 cactaaaaatcaaccccctaataactacacccgtaccaccgccacctctg---ccacccttgccaccctcagtagctccccgacaacggtaaaccttccc 936  Q
     |||    ||| | ||||||||||||||||||||||||||||||||||||   |||||| ||||||||| |||||||||||||| ||||||||| |||||    
T  30618902 -act----atc-agcccctaataactacacccgtaccaccgccacctctgccaccacccctgccaccctaagtagctccccgacgacggtaaactttccc 30618809  T
Q  937 atcatgcacctctttcaacacatcctccaaatgctgccatgtcccagtccctcgcggcaccag 999  Q
    ||||||||||||| ||||  ||||| ||||||||||||||  | ||||||||  |||||||||    
T  30618808 atcatgcacctctctcaatgcatcccccaaatgctgccattcctcagtccctttcggcaccag 30618746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 537 - 785
Target Start/End: Complemental strand, 35335931 - 35335682
Alignment:
Q  537 gtccggattatattatccggagtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagac 636  Q
    ||||||||||||| ||||||| |||| ||  ||| |||||||||||||||||||| |||||||||||||||||||||| ||| | || ||||||| ||||    
T  35335931 gtccggattatataatccggactgcatcagtacagaggcagaagccatctgttttggctgagcctctgttttggcgcaatttgcttgcttccaaacagac 35335832  T
Q  637 atatcatgccggtgacatgttctaacagtaaatcaaacttat-aacattaaaattatcaacacaacataattttgaaacataacattaatcaaatataat 735  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||  |||| |||||||||||||||||||    
T  35335831 atatcatgccggtgacatgttctaacagtaaatcgaacttataaacattaaaatcatcaacacaacataatgtttgaacaaaacattaatcaaatataat 35335732  T
Q  736 taaaaattatccaagattacgtaacattaaaaattatccaaatgttacat 785  Q
    |||||||||||||||||||| |||||||||||||||| ||| ||||||||    
T  35335731 taaaaattatccaagattacataacattaaaaattattcaagtgttacat 35335682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 599 - 750
Target Start/End: Complemental strand, 36340463 - 36340311
Alignment:
Q  599 cctctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgttctaacagtaaatcaaacttat-aacattaaaattatcaaca 697  Q
    |||||||||| ||||||||| | || ||||||| |||||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||| |||||||    
T  36340463 cctctgtttttgcgcattttgcttggttccaaatagacatatcatgccggtgacatgttctaacagtaaatcgaacttctaaacatcaaaatcatcaaca 36340364  T
Q  698 caacataattttgaaacataacattaatcaaatataattaaaaattatccaag 750  Q
    ||||||||||||  |||| ||||||||||||||||||||||||||||||||||    
T  36340363 caacataatttttgaacaaaacattaatcaaatataattaaaaattatccaag 36340311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 572 - 815
Target Start/End: Original strand, 29359868 - 29360106
Alignment:
Q  572 aggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgttctaacagtaaatca 671  Q
    |||||||| ||||||||||| | |||||||||||||||||||||||| | || ||||||| ||||||||||||||| ||||||||||||||||||||||     
T  29359868 aggcagaaaccatctgtttttgatgagcctctgttttggcgcattttgcttgcttccaaacagacatatcatgccgctgacatgttctaacagtaaatcg 29359967  T
Q  672 aacttataacattaaaattatcaacacaacataattttg-aaacataacattaatcaaatataattaaaaatta--tccaagattacgtaacattaaaaa 768  Q
    || ||||        ||| ||||||| || ||||||||| |||||||||||||||||||| ||||||||||| |     |||||||| ||||||| ||||    
T  29359968 aagttat--------aatcatcaacaaaatataattttgcaaacataacattaatcaaatgtaattaaaaatgaataataagattacataacattcaaaa 29360059  T
Q  769 ttatccaaatgttacatcactaaaaattatccaagatattcaaacat 815  Q
    |||||||| |||||||| | | ||||  |||||| ||||||||||||    
T  29360060 ttatccaagtgttacataattcaaaagcatccaaaatattcaaacat 29360106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 601 - 815
Target Start/End: Complemental strand, 10016597 - 10016389
Alignment:
Q  601 tctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgttctaacagtaaatcaaacttataacattaaaattatcaacacaa 700  Q
    |||||||||||||||||| | |  ||||||| ||||||||||||||  | |||||||||||||||||||| ||||| |||       || ||||||| ||    
T  10016597 tctgttttggcgcattttgcttacttccaaacagacatatcatgcccctaacatgttctaacagtaaatcgaacttttaa-------atcatcaacaaaa 10016505  T
Q  701 cataattttg-aaacataacattaatcaaatataattaaaaattatccaagattacgtaacattaaaaattatccaaatgttacatcactaaaaattatc 799  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||| | | ||||  |||    
T  10016504 cataattttgcaaacataacattaatcaaatataattaaaaattatccaagatcacataacattcaaaattatccaagtgttacataattcaaaagcatc 10016405  T
Q  800 caagatattcaaacat 815  Q
    ||  ||||||||||||    
T  10016404 cagaatattcaaacat 10016389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 854 - 976
Target Start/End: Complemental strand, 36340248 - 36340126
Alignment:
Q  854 cccctaataactacacccgtaccaccgccacctctgccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttca 953  Q
    |||||||||||||||||||||||| |||||||||| |||||  || ||||| |||||||||||| || ||||||||| ||| |||||||||||||| |||    
T  36340248 cccctaataactacacccgtaccatcgccacctctaccacctctggcacccacagtagctccccaacgacggtaaactttctcatcatgcacctctctca 36340149  T
Q  954 acacatcctccaaatgctgccat 976  Q
    || ||||||||| ||||||||||    
T  36340148 acgcatcctccagatgctgccat 36340126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 880 - 1033
Target Start/End: Complemental strand, 35335580 - 35335427
Alignment:
Q  880 gccacctctgccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccatgtc 979  Q
    |||||||||| ||||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||| | ||||  ||||||||||||| || |||  |    
T  35335580 gccacctctggcacccctgccaccctcagtagctccctgacgacggtaaactttcccatcatgcacctatctcaatgcatcctccaaatgttgtcattcc 35335481  T
Q  980 ccagtccctcgcggcaccaggccactagacatcacatcatacacatggtctctg 1033  Q
     ||||||||  ||||||||| |||||   |||||||||||| |  |||||||||    
T  35335480 tcagtccctttcggcaccagaccactcctcatcacatcatagatgtggtctctg 35335427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 457 - 608
Target Start/End: Complemental strand, 6660560 - 6660409
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||| | ||||||||||||||||||| | ||||  || || ||||||||||||||||| ||| ||||||  ||  | ||||||||||||| ||||||    
T  6660560 taaatcatcccgttgaaagtcaacaaaagtgggtggtgaacgacggttccagattatataatccggaaagtgataaacctgtccggattatataatccgg 6660461  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgtttt 608  Q
    | | || ||  ||| |||||||||||||||||||| ||||||||||||||||    
T  6660460 aattcatcagtacagaggcagaagccatctgttttggctgagcctctgtttt 6660409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 890 - 1005
Target Start/End: Complemental strand, 10016331 - 10016216
Alignment:
Q  890 ccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccatgtcccagtccctc 989  Q
    |||||| | |||||||||||||||||| ||| ||||||||| ||||| |||||||||||||||||| |||||||||||||||| |||  | ||||||||     
T  10016331 ccacccctaccaccctcagtagctccctgacgacggtaaactttcccttcatgcacctctttcaacgcatcctccaaatgctgtcattcctcagtccctt 10016232  T
Q  990 gcggcaccaggccact 1005  Q
     || ||||||||||||    
T  10016231 tcgacaccaggccact 10016216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 275 - 390
Target Start/End: Complemental strand, 35336197 - 35336082
Alignment:
Q  275 aatacctctaatccagattatataattcgaactcatttcagaatattagtttcggatttattcatggatttttgcacttcaaccaccctgatggatgatg 374  Q
    |||||| ||| ||| ||||||||||||||||| |||| | |||||||| || ||||||||||| || ||||| |||||||| ||||||||||||||||||    
T  35336197 aatacccctagtccggattatataattcgaacccattccggaatattaattccggatttattcgtgtattttggcacttcatccaccctgatggatgatg 35336098  T
Q  375 atgtcaattatgaata 390  Q
    ||| || |||||||||    
T  35336097 atgccagttatgaata 35336082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 890 - 969
Target Start/End: Complemental strand, 38366244 - 38366165
Alignment:
Q  890 ccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatg 969  Q
    |||||| ||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||| | |||||||||||    
T  38366244 ccacccctgccaccatcagtagctccccgacgacggtaaactttcccatcatgcacctctttcaacgcgtcctccaaatg 38366165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 897 - 1005
Target Start/End: Complemental strand, 6660188 - 6660080
Alignment:
Q  897 tgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccatgtcccagtccctcgcggcac 996  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||||||||| ||||||  | ||||||||||| ||||||  | | ||||||  ||||||    
T  6660188 tgccaccatcagtagctccccgacgacggtaaactttcccatcatgcacctttttcaatgcgtcctccaaatgttgccattccacggtccctttcggcac 6660089  T
Q  997 caggccact 1005  Q
    ||| |||||    
T  6660088 cagaccact 6660080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 275 - 390
Target Start/End: Complemental strand, 36340767 - 36340652
Alignment:
Q  275 aatacctctaatccagattatataattcgaactcatttcagaatattagtttcggatttattcatggatttttgcacttcaaccaccctgatggatgatg 374  Q
    |||||| ||| ||| |||||||||||  |||  |||| | |||||||| || ||||||||||| || ||||| |||||| | ||||||||||||||||||    
T  36340767 aatacccctagtccggattatataatctgaatccattcccgaatattaattccggatttattcgtgtattttggcacttgatccaccctgatggatgatg 36340668  T
Q  375 atgtcaattatgaata 390  Q
    |||||| |||||||||    
T  36340667 atgtcagttatgaata 36340652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 765 - 838
Target Start/End: Original strand, 17220351 - 17220425
Alignment:
Q  765 aaaattatccaaatgttacatcactaaaaattatccaagatattcaaaca-taacataattaaaaagtacaatca 838  Q
    |||||||||||||||||| || ||||||||| |||||| ||||||||||| ||||||||||||||||||| ||||    
T  17220351 aaaattatccaaatgttatataactaaaaatcatccaaaatattcaaacattaacataattaaaaagtacgatca 17220425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 315 - 411
Target Start/End: Complemental strand, 6660700 - 6660605
Alignment:
Q  315 gaatattagtttcggatttattcatggatttttgcacttcaaccaccctgatggatgatgatgtcaattatgaatagatgaatgcagattacataat 411  Q
    |||||||| |||||||||||||| |||||||| ||||||| | |||| |||||||||| ||||||| | |||||||||||||| | ||||| |||||    
T  6660700 gaatattaatttcggatttattcgtggattttggcacttc-atcaccttgatggatgaagatgtcagtgatgaatagatgaatccggattatataat 6660605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 397
Target Start/End: Complemental strand, 38366677 - 38366575
Alignment:
Q  294 atataattcgaactcatttcagaatattagtttcggatttattcatggatttttgcacttcaaccaccctgatggatgatgatgtcaattatgaatagat 393  Q
    ||||||| ||||||  ||||||||||||| || ||||||||||| |||||||| ||||||| | || |||||||||||| ||||||  | ||||||||||    
T  38366677 atataatccgaactactttcagaatattaattccggatttattcgtggattttggcacttc-atcatcctgatggatgaagatgtcggtgatgaatagat 38366579  T
Q  394 gaat 397  Q
    ||||    
T  38366578 gaat 38366575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 541 - 618
Target Start/End: Original strand, 17220158 - 17220235
Alignment:
Q  541 ggattatattatccggagtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcatttt 618  Q
    ||||||||| ||||| | || | || |||| |||||||||||||||||||| |||||||||||||||||| |||||||    
T  17220158 ggattatataatccgaattgtatcaacacagaggcagaagccatctgttttggctgagcctctgttttggtgcatttt 17220235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 765 - 822
Target Start/End: Original strand, 43451774 - 43451831
Alignment:
Q  765 aaaattatccaaatgttacatcactaaaaattatccaagatattcaaacataacataa 822  Q
    ||||||||||||||||||||| ||||||| ||||||||  ||||||||||||||||||    
T  43451774 aaaattatccaaatgttacataactaaaagttatccaaattattcaaacataacataa 43451831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 457 - 589
Target Start/End: Complemental strand, 38366516 - 38366384
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||| ||||||||||||||||||| | ||||  || || |||||| |||||||||| ||| |||||   ||    ||||||||||||| |||| |    
T  38366516 taaatcaccccgttgaaagtcaacaaaagtgggtggtgaacgacggttccggattatataatccggaaagtaataaacatgtccggattatataatccag 38366417  T
Q  557 agtgcaccaccacaaaggcagaagccatctgtt 589  Q
    | |||| ||| ||||||||||||| ||||||||    
T  38366416 aatgcatcactacaaaggcagaagacatctgtt 38366384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 327 - 390
Target Start/End: Complemental strand, 30619402 - 30619339
Alignment:
Q  327 cggatttattcatggatttttgcacttcaaccaccctgatggatgatgatgtcaattatgaata 390  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||||||| || |||||||||    
T  30619402 cggatttattcgtgtattttggcacttcatccaccctgatggatgatgatgccatttatgaata 30619339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 377
Target Start/End: Complemental strand, 38986827 - 38986741
Alignment:
Q  291 attatataattcgaactcatttcagaatattagtttcggatttattcatggatttttgcacttcaaccaccctgatggatgatgatg 377  Q
    |||||||||| |||||  ||| |||||||||  || ||||||||||| ||||||||  | ||||| |||||||||||||||||||||    
T  38986827 attatataatccgaaccaattccagaatattgattccggatttattcgtggattttgacgcttcatccaccctgatggatgatgatg 38986741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 924 - 1005
Target Start/End: Complemental strand, 6660059 - 6659978
Alignment:
Q  924 ggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccatgtcccagtccctcgcggcaccaggccact 1005  Q
    ||||||| |||||||||||||||| ||||||  | ||||||||||||||||||  | ||||||||  ||||||||| |||||    
T  6660059 ggtaaactttcccatcatgcacctttttcaatgcgtcctccaaatgctgccattcctcagtccctttcggcaccagaccact 6659978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 457 - 517
Target Start/End: Original strand, 29359758 - 29359818
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataa 517  Q
    ||||||| | ||||||||||||||||||||| ||||  |||||||||| | ||||||||||    
T  29359758 taaatcatcccgttgaaagtcaacaaaagggggtggtgaatgatggtttcggattatataa 29359818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 922 - 969
Target Start/End: Original strand, 17220492 - 17220539
Alignment:
Q  922 acggtaaaccttcccatcatgcacctctttcaacacatcctccaaatg 969  Q
    |||||||||||||||| ||||||||||| |||| || |||||||||||    
T  17220492 acggtaaaccttcccaccatgcacctctctcaatacttcctccaaatg 17220539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 653 - 734
Target Start/End: Original strand, 17220261 - 17220345
Alignment:
Q  653 atgttctaacagtaaatcaaacttataacattaaaattatcaacacaacataattttgaaacat---aacattaatcaaatataa 734  Q
    |||||| ||||| ||||  || ||||||||| | ||||| ||||||||||||||||| ||||||   ||||||||||||| ||||    
T  17220261 atgttcaaacagaaaattgaatttataacataacaattaacaacacaacataattttcaaacattcaaacattaatcaaacataa 17220345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 256
Target Start/End: Complemental strand, 35336250 - 35336220
Alignment:
Q  226 agtattacttttcccaccctatgtctttcct 256  Q
    |||||||||||||||||||||||||||||||    
T  35336250 agtattacttttcccaccctatgtctttcct 35336220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 457 - 487
Target Start/End: Complemental strand, 36340586 - 36340556
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaaggg 487  Q
    |||||||||||||||||||||||||||||||    
T  36340586 taaatcacctcgttgaaagtcaacaaaaggg 36340556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 163; Significance: 2e-86; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 457 - 822
Target Start/End: Original strand, 3425565 - 3425932
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||| |||||||| | |||||| |||  ||| ||||| || |||  ||||| |||| ||| ||||||| ||  | ||||||||||||| |||||     
T  3425565 taaatcaccccgttgaaaattaacaaatggga-tggaaaatgttgtttctggattacataatccggaaagtgttaaaactgtccggattatataatccga 3425663  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagacatatcatgccggtgac---a 653  Q
    | |||| || |||||| |||||||||||||||||| | ||| |||||||||||||||||||  | || ||| ||| | |||||  ||| |||||||   |    
T  3425664 actgcatcagcacaaatgcagaagccatctgttttggttgaacctctgttttggcgcatttagcttgcttctaaacatacatactatgtcggtgacaata 3425763  T
Q  654 tgttctaacagtaaatcaaacttataacattaaaattatcaacacaacataattttgaaacataacattaatcaaatataattaaaaattatccaagatt 753  Q
    ||||||||||||||||  |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3425764 tgttctaacagtaaatttaacttataacataacaattatcaacacaacataattttaaaacataacattaatcaaatataattaaaaattatccaagatt 3425863  T
Q  754 acgtaacattaaaaattatccaaatgttacatcactaaaaattatccaagatattcaaacataacataa 822  Q
    || ||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  3425864 acataaaattaaaaattatccaaatgttacatcactaaaatttatctaagatgttcaaacataacataa 3425932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 604 - 783
Target Start/End: Complemental strand, 26939030 - 26938851
Alignment:
Q  604 gttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgttctaacagtaaatcaaacttataa-cattaaaattatcaacacaaca 702  Q
    ||||||||||||||| | || ||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| ||||||||  ||    
T  26939030 gttttggcgcattttgcttgcttccaaacagacatatcatgccgatgacatgttctaacagtaaatcgaacttataaacattaaaatcatcaacacggca 26938931  T
Q  703 taattttgaaacataacattaatcaaatataattaaaaattatccaagattacgtaacattaaaaattatccaaatgttac 783  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  26938930 taatttcgaa-caaaacattaatcaaatataattaaaaattatccaagattacataacattaaaaattatccaagtgttac 26938851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 649 - 815
Target Start/End: Complemental strand, 41361223 - 41361064
Alignment:
Q  649 tgacatgttctaacagtaaatcaaacttataacattaaaattatcaacacaacataattttg-aaacataacattaatcaaatataattaaaaattatcc 747  Q
    |||||||||||||||||||||| || ||||||        | ||||||| || ||| ||||| |||||||||||||||||||  ||||||||||||||||    
T  41361223 tgacatgttctaacagtaaatcgaagttataa--------tcatcaacaaaatatatttttgcaaacataacattaatcaaacgtaattaaaaattatcc 41361132  T
Q  748 aagattacgtaacattaaaaattatccaaatgttacatcactaaaaattatccaagatattcaaacat 815  Q
    |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  41361131 aagattacataatattaaaaattatccaaatgttacatcaccaaaaattatccaagatgttcaaacat 41361064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 691 - 815
Target Start/End: Original strand, 5955599 - 5955723
Alignment:
Q  691 atcaacacaacataattttg-aaacataacattaatcaaatataattaaaaattatccaagattacgtaacattaaaaattatccaaatgttacatcact 789  Q
    ||||||| || ||||||||| |||||||| ||||| ||||  |||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||     
T  5955599 atcaacaaaatataattttgcaaacataatattaaacaaacgtaattaaaaattatccaagattacataacattaaaaa-tattcaaatgttacatcacc 5955697  T
Q  790 aaaaattatccaagatattcaaacat 815  Q
    |||||||||||||||| |||||||||    
T  5955698 aaaaattatccaagatgttcaaacat 5955723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 891 - 969
Target Start/End: Original strand, 3425998 - 3426076
Alignment:
Q  891 cacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatg 969  Q
    |||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||| |||||||||||||    
T  3425998 cacccttgccaccctcagtagctccccgacgacggtaaacttccccatcatgcacctctttcaacgcatcctccaaatg 3426076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 880 - 1033
Target Start/End: Original strand, 18542976 - 18543129
Alignment:
Q  880 gccacctctgccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccatgtc 979  Q
    |||||||||| |  || ||||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||  ||||||||||||||||||||  |    
T  18542976 gccacctctggcttccctgccaccctcagtagcttcccgacgacggtaaactttcccatcatgcacctatttcaatgcatcctccaaatgctgccattcc 18543075  T
Q  980 ccagtccctcgcggcaccaggccactagacatcacatcatacacatggtctctg 1033  Q
     ||||| ||  ||||||||| ||| |   |||||||||||| |  |||||||||    
T  18543076 tcagtcactttcggcaccagaccatttctcatcacatcatagatgtggtctctg 18543129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 294 - 608
Target Start/End: Original strand, 30843083 - 30843395
Alignment:
Q  294 atataattcgaactcatttcagaatattagtttcggatttattcatggatttttgcacttcaaccaccctgatggatgatgatgtcaattatgaatagat 393  Q
    |||||||| |||||  || | |||||||| |||||||||||||| |||||||| |||||||| | |||||||||||||| ||||||| | ||||||||||    
T  30843083 atataatttgaactacttccggaatattaatttcggatttattcgtggattttggcacttcatc-accctgatggatgaagatgtcagtgatgaatagat 30843181  T
Q  394 gaatgcagattacataatccgtatagattgtacaatatccagannnnnnnaacgcgaaatggttaaatcacctcgttgaaagtcaacaaaagggtgtggg 493  Q
    |||| | ||||| |||||||  | |  || ||  || ||| ||       | | ||||  |  |||||||||   ||||||||||||||||||| ||||     
T  30843182 gaatccggattatataatccaaacattttatatcatttccggattatataatc-cgaatagtgtaaatcaccctattgaaagtcaacaaaagggggtggt 30843280  T
Q  494 aaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccggagtgcaccaccacaaaggcagaagccatctgttttag 593  Q
     || || |||||| |||||||||| ||| ||||||  ||    ||||||||||||| | ||||| |||| ||  ||| ||||||||||||||||||||||    
T  30843281 gaacgacggttccggattatataatccggaaagtgataaacatgtccggattatataaaccggaatgcatcagtacagaggcagaagccatctgttttag 30843380  T
Q  594 ctgagcctctgtttt 608  Q
    |||||||| ||||||    
T  30843381 ctgagcctgtgtttt 30843395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 765 - 836
Target Start/End: Original strand, 42457771 - 42457842
Alignment:
Q  765 aaaattatccaaatgttacatcactaaaaattatccaagatattcaaacataacataattaaaaagtacaat 836  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||| ||||||    
T  42457771 aaaattatccaaatgttacatcactaaaaattatccaaattattcaaacatatcataattaaaaattacaat 42457842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 881 - 969
Target Start/End: Complemental strand, 47476242 - 47476154
Alignment:
Q  881 ccacctctgccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatg 969  Q
    ||||||||||||||  ||||||| |||||||||| ||||| ||||||||| |||||||||||||||||||||||| | |||| ||||||    
T  47476242 ccacctctgccaccactgccaccatcagtagctctccgacgacggtaaactttcccatcatgcacctctttcaacgcgtcctgcaaatg 47476154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 457 - 608
Target Start/End: Complemental strand, 47476616 - 47476465
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||  ||||||||||||||||||| | ||||  || || |||||| |||||||||| ||| ||||||  ||  | ||||||||||||| |||| |    
T  47476616 taaatcactccgttgaaagtcaacaaaagtgggtggtgaacgacggttccggattatataatccggaaagtgataaacctgtccggattatataatccag 47476517  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgtttt 608  Q
    | |||| ||  ||| || |||||||||||||||||||||||| |||||||||    
T  47476516 aatgcatcagtacagagacagaagccatctgttttagctgagactctgtttt 47476465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 897 - 1033
Target Start/End: Original strand, 5955800 - 5955936
Alignment:
Q  897 tgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccatgtcccagtccctcgcggcac 996  Q
    ||||||||||||| ||||||||   ||||||||| ||  |||||||||||||||||||  ||||||||||||||||||||  | ||||||||  ||||||    
T  5955800 tgccaccctcagtggctccccggtgacggtaaactttttcatcatgcacctctttcaaagcatcctccaaatgctgccattccacagtccctttcggcac 5955899  T
Q  997 caggccactagacatcacatcatacacatggtctctg 1033  Q
     || |||||   |||||||||||| |  |||||||||    
T  5955900 gagaccacttctcatcacatcatagatgtggtctctg 5955936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 290 - 390
Target Start/End: Complemental strand, 26939324 - 26939224
Alignment:
Q  290 gattatataattcgaactcatttcagaatattagtttcggatttattcatggatttttgcacttcaaccaccctgatggatgatgatgtcaattatgaat 389  Q
    ||||||||||| ||||| |||| |  ||||||| || ||||||||||| || ||||| |||||||| ||||||||||| |||||||||||| ||||||||    
T  26939324 gattatataatccgaacccattccgaaatattaattccggatttattcgtgtattttggcacttcatccaccctgatgaatgatgatgtcagttatgaat 26939225  T
Q  390 a 390  Q
    |    
T  26939224 a 26939224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 881 - 969
Target Start/End: Original strand, 30843621 - 30843709
Alignment:
Q  881 ccacctctgccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatg 969  Q
    ||||||||||||||  ||||||| ||||||| |||||||| ||||||||| || | ||||||||||||||||||| | |||||||||||    
T  30843621 ccacctctgccaccactgccaccatcagtagatccccgacgacggtaaacttttcgatcatgcacctctttcaacgcgtcctccaaatg 30843709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 294 - 414
Target Start/End: Original strand, 43702707 - 43702826
Alignment:
Q  294 atataattcgaactcatttcagaatattagtttcggatttattcatggatttttgcacttcaaccaccctgatggatgatgatgtcaattatgaatagat 393  Q
    ||||||| ||||||  || | |||||||| || ||||||||||| |||||||| |||||| || ||||||||||||||| ||||||| | ||||||||||    
T  43702707 atataatccgaactacttccggaatattaattccggatttattcgtggattttggcactt-aatcaccctgatggatgaagatgtcagtaatgaatagat 43702805  T
Q  394 gaatgcagattacataatccg 414  Q
    |||| | ||||| ||||||||    
T  43702806 gaatccggattatataatccg 43702826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 890 - 969
Target Start/End: Original strand, 43703232 - 43703311
Alignment:
Q  890 ccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatg 969  Q
    |||||| ||||||| |||||||||||||||| ||||||||| ||||| |||| ||||||||||||| | |||||||||||    
T  43703232 ccacccctgccaccatcagtagctccccgacgacggtaaactttcccgtcattcacctctttcaacgcgtcctccaaatg 43703311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 765 - 840
Target Start/End: Complemental strand, 902991 - 902915
Alignment:
Q  765 aaaattatccaaatgttacatcactaaaaattatccaagatattcaaac-ataacataattaaaaagtacaatcatc 840  Q
    |||||||| ||||| |||||| ||||||||| |||||| |||||||||| |||||||||||| ||| ||||||||||    
T  902991 aaaattattcaaatattacataactaaaaatcatccaaaatattcaaacaataacataattataaattacaatcatc 902915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 881 - 969
Target Start/End: Complemental strand, 26938744 - 26938657
Alignment:
Q  881 ccacctctgccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatg 969  Q
    |||| |||| ||||| |||||||||||||||||||||||| || |||||| ||||| | |||||||||| ||||| |||||| ||||||    
T  26938744 ccacgtctggcacccctgccaccctcagtagctccccgacgacagtaaactttccc-tgatgcacctctctcaacgcatccttcaaatg 26938657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 457 - 517
Target Start/End: Complemental strand, 41362285 - 41362225
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataa 517  Q
    |||||||||| |||||||||||||||||||| ||||  |||||||||||| ||||||||||    
T  41362285 taaatcacctagttgaaagtcaacaaaagggggtggtgaatgatggttccggattatataa 41362225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 291 - 394
Target Start/End: Original strand, 3425400 - 3425503
Alignment:
Q  291 attatataattcgaactcatttcagaatattagtttcggatttattcatggatttttgcacttcaaccaccctgatggatgatgatgtcaattatgaata 390  Q
    |||||||||| ||||||  || | || || || ||| |||||||||| ||| |||| |||||||| ||||| ||||||||||||||| || |||||||||    
T  3425400 attatataatccgaactagttccggagtaatatttttggatttattcgtggtttttggcacttcatccaccatgatggatgatgatgccagttatgaata 3425499  T
Q  391 gatg 394  Q
    ||||    
T  3425500 gatg 3425503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 457 - 608
Target Start/End: Original strand, 18542590 - 18542741
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||| ||||||||||||||||||||| ||||  || ||||||| | |||||||||| ||| || ||   |   |  ||| ||||||||  |||||    
T  18542590 taaatcaccccgttgaaagtcaacaaaagggggtggtgaacgatggtttcggattatataatccggaacgttatagaccgctccagattatatattccgg 18542689  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgtttt 608  Q
    | |||| ||  ||| ||||| |||||||||||||||||| ||||||||||||    
T  18542690 actgcatcagtacagaggcataagccatctgttttagctaagcctctgtttt 18542741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 855 - 894
Target Start/End: Complemental strand, 26938794 - 26938755
Alignment:
Q  855 ccctaataactacacccgtaccaccgccacctctgccacc 894  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  26938794 ccctaataactagacccgtaccaccgccacctctgccacc 26938755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 457 - 608
Target Start/End: Original strand, 43702868 - 43703018
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||| ||||||||||||||||||| | ||||  || ||||||||| |||||||||| ||| |   | | ||| | ||||||||||||| ||||      
T  43702868 taaatcaccccgttgaaagtcaacaaaagtgggtggtgaacgatggttccggattatataatccggatgttataaat-ctgtccggattatataatccaa 43702966  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgtttt 608  Q
    | |||| ||  | | ||||||||| |||||||||| ||||||||| ||||||    
T  43702967 actgcatcagtatagaggcagaagtcatctgttttggctgagcctatgtttt 43703018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 567 - 617
Target Start/End: Complemental strand, 903158 - 903108
Alignment:
Q  567 cacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattt 617  Q
    |||| |||||||||| |||||||||||| ||| ||||||||||||||||||    
T  903158 cacagaggcagaagctatctgttttagccgagactctgttttggcgcattt 903108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 327 - 393
Target Start/End: Original strand, 18542461 - 18542527
Alignment:
Q  327 cggatttattcatggatttttgcacttcaaccaccctgatggatgatgatgtcaattatgaatagat 393  Q
    ||||||||||| || ||||| | |||||| |||| ||||||||||||| ||||| ||||||||||||    
T  18542461 cggatttattcgtgtattttggtacttcatccactctgatggatgatggtgtcagttatgaatagat 18542527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 4049263 - 4049231
Alignment:
Q  224 tgagtattacttttcccaccctatgtctttcct 256  Q
    |||||||||||||||||||||||||||||||||    
T  4049263 tgagtattacttttcccaccctatgtctttcct 4049231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 805 - 840
Target Start/End: Original strand, 23148554 - 23148589
Alignment:
Q  805 tattcaaacataacataattaaaaagtacaatcatc 840  Q
    ||||||||||||||||||||||||| ||||||||||    
T  23148554 tattcaaacataacataattaaaaattacaatcatc 23148589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 256
Target Start/End: Complemental strand, 26939394 - 26939363
Alignment:
Q  225 gagtattacttttcccaccctatgtctttcct 256  Q
    ||||||||||||||||||||||||||||||||    
T  26939394 gagtattacttttcccaccctatgtctttcct 26939363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 897 - 969
Target Start/End: Complemental strand, 41361011 - 41360943
Alignment:
Q  897 tgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatg 969  Q
    |||||||||||||||||||||| | ||||||||    |||||| ||||||||||||||  ||||||| |||||    
T  41361011 tgccaccctcagtagctccccggcgacggtaaa----cccatcgtgcacctctttcaaagcatcctctaaatg 41360943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 767 - 815
Target Start/End: Original strand, 18542852 - 18542898
Alignment:
Q  767 aattatccaaatgttacatcactaaaaattatccaagatattcaaacat 815  Q
    ||||||||||||||||||| ||  |||||||||||| ||||||||||||    
T  18542852 aattatccaaatgttacataac--aaaattatccaaaatattcaaacat 18542898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 6e-86; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 457 - 969
Target Start/End: Original strand, 3406766 - 3407251
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||| | ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||  |   ||  | ||| ||| | ||| ||||||    
T  3406766 taaatcaccccattgaaagtcaacaaaagggggtggtaaatgatggttccagattatataatccggaatctcataaatctgtctggaatttataatccgg 3406865  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgt 656  Q
    | |||| ||  ||| |||||||||||||||||||| |||||||||||||||||||||||||| | || ||||||| ||||||||||||||| ||||||||    
T  3406866 aatgcatcagtacagaggcagaagccatctgtttttgctgagcctctgttttggcgcattttgcttgcttccaaacagacatatcatgccgctgacatgt 3406965  T
Q  657 tctaacagtaaatcaaacttataacattaaaattatcaacacaacataattttg-aaacataacattaatcaaatataattaaaaattatccaagattac 755  Q
    ||| |||||||||  || ||||||        | ||||||| || ||||||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  3406966 tcttacagtaaattgaagttataa--------tcatcaacaaaatataattttgcaaacataacattaatcaaacttaattaaaaattatccaagattac 3407057  T
Q  756 gtaacattaaaaattatccaaatgttacatcactaaaaattatccaagatattcaaacat--aacataattaaaaagtacaatcatcactaaaaatcaac 853  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||  ||  ||| |||||  |||||||         |||        
T  3407058 ataacattaaaaattatccaaatgttacatcaccaaaaattatccaagatgttcaaatattaaaagtaaataaaa--tacaatc---------aat---- 3407142  T
Q  854 cccctaataactacacccgtaccaccgccacctctgccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttca 953  Q
     ||||||||||||||||| ||       |||||||||||||| |||||||||||||||||||||  | |||| |||| ||||||||||||||||||||||    
T  3407143 -ccctaataactacaccccta------gcacctctgccacccctgccaccctcagtagctccccagcgacggaaaactttcccatcatgcacctctttca 3407235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 448 - 608
Target Start/End: Original strand, 34319117 - 34319276
Alignment:
Q  448 cgaaatggttaaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattat 547  Q
    |||||||  ||||||| | ||||||||||||||||| ||| ||||||||||||  |||| || |||| || ||||||||||| ||  | |||||||||||    
T  34319117 cgaaatgtgtaaatcatcccgttgaaagtcaacaaatggg-gtgggaaatgatttttccggactatagaatccgaaaagtgttaaaactgtccggattat 34319215  T
Q  548 attatccggagtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgtttt 608  Q
       ||||  | |||| || ||||||||||||||||||||||||| |||||||||| |||||    
T  34319216 ggaatccaaactgcatcagcacaaaggcagaagccatctgttttggctgagcctcagtttt 34319276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 765 - 815
Target Start/End: Original strand, 20990721 - 20990771
Alignment:
Q  765 aaaattatccaaatgttacatcactaaaaattatccaagatattcaaacat 815  Q
    ||||||||||||||||||||| ||| ||||| |||||  ||||||||||||    
T  20990721 aaaattatccaaatgttacataacttaaaatcatccataatattcaaacat 20990771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 341 - 414
Target Start/End: Original strand, 34319011 - 34319084
Alignment:
Q  341 gatttttgcacttcaaccaccctgatggatgatgatgtcaattatgaatagatgaatgcagattacataatccg 414  Q
    |||||| |||||| ||||| ||||||||||| ||||| |||| || ||| |||| || |||||| |||||||||    
T  34319011 gattttggcacttaaaccatcctgatggatgttgatgccaatgattaatggatggattcagattccataatccg 34319084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 6e-80; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 460 - 785
Target Start/End: Complemental strand, 42724722 - 42724398
Alignment:
Q  460 atcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccggagt 559  Q
    |||||| ||||||||||||||||||||| |  |  || |||| |||||||||||||||  || || |||  ||  | ||| | | ||||| ||||||| |    
T  42724722 atcaccccgttgaaagtcaacaaaaggggggtg--aacgatgattccagattatataatgcggaatgtgctaaaactgtcagaactatataatccggact 42724625  T
Q  560 gcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgttct 659  Q
    ||| ||  ||| |||||||||||||||||||| ||||||||||| |||||||||||||| | || ||||||| |||||||||||||||||||||||||||    
T  42724624 gcatcagtacagaggcagaagccatctgttttggctgagcctctattttggcgcattttgcttgcttccaaacagacatatcatgccggtgacatgttct 42724525  T
Q  660 aacagtaaatcaaacttat-aacattaaaattatcaacacaacataattttgaaacataacattaatcaaatataattaaaaattatccaagattacgta 758  Q
    ||||||||||| |||| || ||||||||||| |||||||||||||||||||  |||| ||| ||||||||||||||||||||||||||||||||||| ||    
T  42724524 aacagtaaatcgaactcataaacattaaaatcatcaacacaacataattttcgaacaaaaccttaatcaaatataattaaaaattatccaagattacata 42724425  T
Q  759 acattaaaaattatccaaatgttacat 785  Q
    |||||||||||||||||| ||||||||    
T  42724424 acattaaaaattatccaagtgttacat 42724398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 457 - 815
Target Start/End: Complemental strand, 38342042 - 38341691
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||| ||||||||||||||||||||| ||||  |||||||||||| |||||||||| | | ||  |   ||  | || |||| | ||| ||||||    
T  38342042 taaatcaccccgttgaaagtcaacaaaagggggtggtgaatgatggttccggattatataatctggaatctcataaatctgttcggaatttataatccgg 38341943  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgt 656  Q
    | |||| ||  ||| |||||||||||||||||||| |||||||||||||||||||||||||| | || |||||||||||||||| |||||| ||||||||    
T  38341942 aatgcatcagtacagaggcagaagccatctgtttttgctgagcctctgttttggcgcattttgcttgcttccaaagagacatattatgccgctgacatgt 38341843  T
Q  657 tctaacagtaaatcaaacttataacattaaaattatcaacacaacataattttg-aaacataacattaatcaaatataattaaaaattatccaagattac 755  Q
    |||||||||||||| || ||||||        | ||||||| || ||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||    
T  38341842 tctaacagtaaatcgaagttataa--------tcatcaacaaaatataattttgcaaacataacattaataaaacataattaaaaattatccaagattac 38341751  T
Q  756 gtaacattaaaaattatccaaatgttacatcactaaaaattatccaagatattcaaacat 815  Q
     |||||||||||||||||||| ||||||||||  |||||||||||||||| |||||||||    
T  38341750 ataacattaaaaattatccaactgttacatcatcaaaaattatccaagatgttcaaacat 38341691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 457 - 815
Target Start/End: Original strand, 8601797 - 8602148
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||||| |||||||||| | | ||  |   ||    || |||| | ||| ||||||    
T  8601797 taaatcacctcgttgaaagtcaacaaaagggggtggtgaatgatggttccggattatataatctggaatctcataaatttgttcggaatttataatccgg 8601896  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgt 656  Q
    | |||| ||  ||| |||||||||||||||||||| | |||||||||||||||||||||||| | || ||||||| ||||||||||||| | ||||||||    
T  8601897 aatgcatcagtacagaggcagaagccatctgtttttgttgagcctctgttttggcgcattttgcttgcttccaaacagacatatcatgctgctgacatgt 8601996  T
Q  657 tctaacagtaaatcaaacttataacattaaaattatcaacacaacataattttg-aaacataacattaatcaaatataattaaaaattatccaagattac 755  Q
    |||||||||||||| || ||||||        | |||||||  | ||||||||| |||||||||||||||||||  |||||||||||||| |||||||||    
T  8601997 tctaacagtaaatcgaagttataa--------tcatcaacaacatataattttgcaaacataacattaatcaaacgtaattaaaaattattcaagattac 8602088  T
Q  756 gtaacattaaaaattatccaaatgttacatcactaaaaattatccaagatattcaaacat 815  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  8602089 ataacattaaaaattatccaaatgttacatcaccaaaaattatccaagatgttcaaacat 8602148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 605 - 814
Target Start/End: Complemental strand, 46808468 - 46808266
Alignment:
Q  605 ttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgttctaacagtaaatcaaacttataacattaaaattatcaacacaacata 704  Q
    |||||||||| ||| | || ||||||| ||||||||||||||| | ||||||||||| |||||||| || ||||||        | ||||||| || |||    
T  46808468 ttttggcgcaatttgcttgcttccaaacagacatatcatgccgcttacatgttctaatagtaaatcgaatttataa--------tcatcaacaaaatata 46808377  T
Q  705 attttg-aaacataacattaatcaaatataattaaaaattatccaagattacgtaacattaaaaattatccaaatgttacatcactaaaaattatccaag 803  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  46808376 attttgcaaacataacattaatcaaacataattaaaaattatccaacattacataacattaaaaattatccaaatgttacatcaccaaaaattatccaag 46808277  T
Q  804 atattcaaaca 814  Q
    || ||||||||    
T  46808276 atgttcaaaca 46808266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 691 - 815
Target Start/End: Original strand, 3529240 - 3529365
Alignment:
Q  691 atcaacacaacataattttg-aaacataacattaatcaaatataattaaaaattatccaagattacgtaacattaaaaattatccaaatgttacatcact 789  Q
    ||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||     
T  3529240 atcaacaaaatataattttgcaaacataacattaatcaaacataattaaaaattatccaagattacataacatttaaaattatccaaatgttacatcacc 3529339  T
Q  790 aaaaattatccaagatattcaaacat 815  Q
    ||||||||| |||||| |||||||||    
T  3529340 aaaaattattcaagatgttcaaacat 3529365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 457 - 608
Target Start/End: Complemental strand, 39349776 - 39349625
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||| ||||||||||||||||||| | ||||  || || |||||| |||||||||| ||| ||||||  ||    ||||||||||||| ||||||    
T  39349776 taaatcaccccgttgaaagtcaacaaaagtgggtggtgaacgacggttccggattatataatccggaaagtgataaacatgtccggattatataatccgg 39349677  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgtttt 608  Q
    | |||| ||  ||| |||||||||||||||||||| ||||||||||||||||    
T  39349676 aatgcatcagtacagaggcagaagccatctgttttggctgagcctctgtttt 39349625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 890 - 1020
Target Start/End: Complemental strand, 39349410 - 39349280
Alignment:
Q  890 ccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccatgtcccagtccctc 989  Q
    |||||| ||||||| |||||||||||| ||| ||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||  | ||||||||     
T  39349410 ccacccctgccaccatcagtagctccctgacgacggtaaactttcccatcatgcacctctttcaacgcgtcctccaaatgatgccattcctcagtccctt 39349311  T
Q  990 gcggcaccaggccactagacatcacatcata 1020  Q
     ||||||||  |||||   ||||||||||||    
T  39349310 tcggcaccaaaccacttctcatcacatcata 39349280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 457 - 608
Target Start/End: Complemental strand, 43726215 - 43726064
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||| ||||||||||||||||||| | ||||  || ||||||||| |||||||||| ||||||||||  ||  | ||||||||||||| || | |    
T  43726215 taaatcaccccgttgaaagtcaacaaaagtgggtggtgaacgatggttccggattatataatccgaaaagtgataaacctgtccggattatataattcag 43726116  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgtttt 608  Q
    | |||| ||  || ||||||||||||||||||||| || |||||| ||||||    
T  43726115 aatgcatcagtactaaggcagaagccatctgttttggccgagcctatgtttt 43726064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 897 - 976
Target Start/End: Original strand, 3529421 - 3529500
Alignment:
Q  897 tgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccat 976  Q
    |||||||||||||||||||||| | ||||| ||| |||||||||||||||||||| ||  ||||||||||||||||||||    
T  3529421 tgccaccctcagtagctccccggcgacggtgaactttcccatcatgcacctctttgaaagcatcctccaaatgctgccat 3529500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 890 - 976
Target Start/End: Complemental strand, 43725837 - 43725751
Alignment:
Q  890 ccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccat 976  Q
    |||||| |||| |||| |||||||||||||| ||| ||||| |||||||||||||||||||||||| | |||| |||||||||||||    
T  43725837 ccacccctgccgcccttagtagctccccgacgacgataaactttcccatcatgcacctctttcaacgcgtccttcaaatgctgccat 43725751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 929
Target Start/End: Original strand, 36726758 - 36726830
Alignment:
Q  857 ctaataactacacccgtaccaccgccacctctgccacccttgccaccctcagtagctccccgacaacggtaaa 929  Q
    ||||||||||||||||||||||| ||||||||| ||||| | |||||||||||||||||||||| | ||||||    
T  36726758 ctaataactacacccgtaccaccaccacctctggcacccctaccaccctcagtagctccccgacgatggtaaa 36726830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 275 - 390
Target Start/End: Complemental strand, 51898907 - 51898793
Alignment:
Q  275 aatacctctaatccagattatataattcgaactcatttcagaatattagtttcggatttattcatggatttttgcacttcaaccaccctgatggatgatg 374  Q
    |||||| ||| ||||||||||||||| | ||| |||| | | |||||| ||||| |||||||| || ||||| |||||| | ||||||||||||||||||    
T  51898907 aatacccctagtccagattatataatccaaacccatt-cgggatattaatttcgaatttattcgtgtattttggcactttatccaccctgatggatgatg 51898809  T
Q  375 atgtcaattatgaata 390  Q
    ||| || |||||||||    
T  51898808 atgccatttatgaata 51898793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 897 - 969
Target Start/End: Original strand, 8605771 - 8605843
Alignment:
Q  897 tgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatg 969  Q
    |||||||||||||||||| ||| | ||||||||| |||| ||| ||||||||||||||  |||||||||||||    
T  8605771 tgccaccctcagtagctcgccggcgacggtaaactttcctatcctgcacctctttcaaagcatcctccaaatg 8605843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 39349916 - 39349818
Alignment:
Q  315 gaatattagtttcggatttattcatggatttttgcacttcaaccaccctgatggatgatgatgtcaattatgaatagatgaatgcagattacataatccg 414  Q
    |||||||| |||||||||||||| |||||||| | |||||| | ||||| ||| |||| ||||||| | |||||||||||||| | ||||| ||||||||    
T  39349916 gaatattaatttcggatttattcgtggattttggaacttcatc-accctaatgaatgaagatgtcactgatgaatagatgaatccggattatataatccg 39349818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 42724852 - 42724791
Alignment:
Q  329 gatttattcatggatttttgcacttcaaccaccctgatggatgatgatgtcaattatgaata 390  Q
    ||||||||| || ||||| |||||||| ||||||||||||||||||||| || |||||||||    
T  42724852 gatttattcgtgtattttggcacttcatccaccctgatggatgatgatgccagttatgaata 42724791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 538 - 608
Target Start/End: Complemental strand, 26981598 - 26981528
Alignment:
Q  538 tccggattatattatccggagtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgtttt 608  Q
    |||||||| ||| ||||| | |||| || |||| |||||||||||||||||||| ||||||||| ||||||    
T  26981598 tccggattttataatccgaactgcatcagcacagaggcagaagccatctgttttggctgagcctttgtttt 26981528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 585 - 644
Target Start/End: Original strand, 3526450 - 3526509
Alignment:
Q  585 ctgttttagctgagcctctgttttggcgcattttccatgattccaaagagacatatcatg 644  Q
    ||||||| | |||||||||||||||||||||||| | || ||||||| |||||| |||||    
T  3526450 ctgtttttgttgagcctctgttttggcgcattttgcttgcttccaaacagacatgtcatg 3526509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 9e-76; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 538 - 785
Target Start/End: Complemental strand, 42279453 - 42279205
Alignment:
Q  538 tccggattatattatccggagtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagaca 637  Q
    |||||||||||| ||||||| |||| ||   || ||||||||||||| |||||| |||||||||||||||||||||||||| | || ||||||| |||||    
T  42279453 tccggattatataatccggactgcatcagtgcagaggcagaagccatatgttttggctgagcctctgttttggcgcattttgcttgcttccaaacagaca 42279354  T
Q  638 tatcatgccggtgacatgttctaacagtaaatcaaacttat-aacattaaaattatcaacacaacataattttgaaacataacattaatcaaatataatt 736  Q
    ||| ||| ||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||  |||| | ||||||||||||||||||    
T  42279353 tataatgtcggtgacatgttctaacagtaaatcgaacttataaacattaaaatcatcaacacaacataattttcgaacaaagcattaatcaaatataatt 42279254  T
Q  737 aaaaattatccaagattacgtaacattaaaaattatccaaatgttacat 785  Q
    ||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  42279253 aaaaattattcaagattacataacattaaaaattatccaagtgttacat 42279205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 572 - 815
Target Start/End: Original strand, 34660668 - 34660904
Alignment:
Q  572 aggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgttctaacagtaaatca 671  Q
    |||||||||| ||||||||| | | ||||||| |||||||||||||| | || ||||||| ||||||||||||| | |||||||||||||||||||||      
T  34660668 aggcagaagcaatctgtttttgataagcctctattttggcgcattttgcttgcttccaaacagacatatcatgctgctgacatgttctaacagtaaattg 34660767  T
Q  672 aacttataacattaaaattatcaacacaacataattttg-aaacataacattaatcaaatataattaaaaattatccaagattacgtaacattaaaaatt 770  Q
    || ||||||        | ||||||| || ||||||||| |||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||    
T  34660768 aagttataa--------tcatcaacaaaatataattttgcaaacataacattaatcaaacgtaattaaaaattatccaagattacataacattaaaaatt 34660859  T
Q  771 atccaaatgttacatcactaaaaattatccaagatattcaaacat 815  Q
    |||||||||||||||||| |||||||||||||||| |||||||||    
T  34660860 atccaaatgttacatcaccaaaaattatccaagatgttcaaacat 34660904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 572 - 815
Target Start/End: Original strand, 44997325 - 44997561
Alignment:
Q  572 aggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgttctaacagtaaatca 671  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||| | || ||||||  ||||||||||||  | |||||| |||||||| ||||||     
T  44997325 aggcagaagccatctgtttttgctgagcctttgttttggcgcattttgcttgcttccaatcagacatatcatgttgctgacatattctaacaataaatcg 44997424  T
Q  672 aacttataacattaaaattatcaacacaacataattttgaaa-cataacattaatcaaatataattaaaaattatccaagattacgtaacattaaaaatt 770  Q
    || ||||||        | ||||||| || |||||||||||| ||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||    
T  44997425 aagttataa--------tcatcaacaaaatataattttgaaaacataacattaatcaaacgtaattaaaaattatccaagattacataacattaaaaatt 44997516  T
Q  771 atccaaatgttacatcactaaaaattatccaagatattcaaacat 815  Q
    |||||||||||||||||| |||||||||||||||| |||||||||    
T  44997517 atccaaatgttacatcacaaaaaattatccaagatgttcaaacat 44997561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 457 - 815
Target Start/End: Complemental strand, 5345072 - 5344722
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||| ||||||||||||||||||||| || |  |||||||||||| |||||||||| | | ||  |   ||  | ||||||| | ||| ||| ||    
T  5345072 taaatcacc-cgttgaaagtcaacaaaagggggtagtgaatgatggttccggattatataatctggaatctcataaatctgtccggaatttataatcagg 5344974  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgt 656  Q
    | |||| ||  ||| ||||||||||  |||||||| | |||||||||||||||||||||||| | || ||||||| ||||||||||||||| | ||||||    
T  5344973 aatgcatcagtacagaggcagaagcagtctgtttttgttgagcctctgttttggcgcattttgcttgcttccaaacagacatatcatgccgctaacatgt 5344874  T
Q  657 tctaacagtaaatcaaacttataacattaaaattatcaacacaacataattttg-aaacataacattaatcaaatataattaaaaattatccaagattac 755  Q
    ||||| |||||||  || ||||||        | ||||||| || ||||||||| |||||||| ||||||||||  ||||||||||||||||||||||||    
T  5344873 tctaaaagtaaatagaagttataa--------tcatcaacaaaatataattttgcaaacataaaattaatcaaacgtaattaaaaattatccaagattac 5344782  T
Q  756 gtaacattaaaaattatccaaatgttacatcactaaaaattatccaagatattcaaacat 815  Q
     |||||||||||||||||||||||||  ||||| |||||||||||||||| |||||||||    
T  5344781 ataacattaaaaattatccaaatgttcgatcaccaaaaattatccaagatgttcaaacat 5344722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 605 - 815
Target Start/End: Complemental strand, 36833464 - 36833260
Alignment:
Q  605 ttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgttctaacagtaaatcaaacttataacattaaaattatcaacacaacata 704  Q
    |||||||||||||| | || ||||||| ||||||||||||||   ||||||||||||||||||||| |||||||||       || ||||| | ||||||    
T  36833464 ttttggcgcattttgcttgcttccaaacagacatatcatgccaaagacatgttctaacagtaaatcgaacttataa-------atcatcaataaaacata 36833372  T
Q  705 attttg-aaacataacattaatcaaatataattaaaaattatccaagattacgtaacattaaaaattatccaaatgttacatcactaaaaattatccaag 803  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| | | ||||  ||||||     
T  36833371 attttgcaaacataacattaatcaaatataattaaaaatcatccaagattacataacattaaaaattatccaagtgttacataattcaaaagcatccaaa 36833272  T
Q  804 atattcaaacat 815  Q
    ||||||||||||    
T  36833271 atattcaaacat 36833260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 691 - 815
Target Start/End: Complemental strand, 43097124 - 43096999
Alignment:
Q  691 atcaacacaacataattttg-aaacataacattaatcaaatataattaaaaattatccaagattacgtaacattaaaaattatccaaatgttacatcact 789  Q
    ||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||     
T  43097124 atcaacaaaatataattttgcaaacataacattaatcaaacataattaaaaattatccaagattacataacattaaaaatcatccaaatgttacatcaca 43097025  T
Q  790 aaaaattatccaagatattcaaacat 815  Q
    |||||||||| || || |||||||||    
T  43097024 aaaaattatcgaaaatgttcaaacat 43096999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 880 - 1005
Target Start/End: Complemental strand, 42279103 - 42278978
Alignment:
Q  880 gccacctctgccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccatgtc 979  Q
    |||||||||| ||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||||| ||||||  |    
T  42279103 gccacctctggcacccctgccaccctcagtagctccccgacgacggtaaactttcccatcatgcacctctctcaacgcatcctccaaatgttgccattcc 42279004  T
Q  980 ccagtccctcgcggcaccaggccact 1005  Q
     ||||||||  || |||||| |||||    
T  42279003 tcagtccctttcgccaccagaccact 42278978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 538 - 734
Target Start/End: Original strand, 14088764 - 14088962
Alignment:
Q  538 tccggattatattatccggagtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagaca 637  Q
    |||||||||| | ||||| | |||| || |||| |||||||||||||||||||| |||||||||||||||||||||||||  | || ||| |||  ||||    
T  14088764 tccggattatgtaatccgaaatgcatcaacacagaggcagaagccatctgttttggctgagcctctgttttggcgcatttatcttgcttctaaa-cgaca 14088862  T
Q  638 tatcatgcc---ggtgacatgttctaacagtaaatcaaacttataacattaaaattatcaacacaacataattttgaaacataacattaatcaaatataa 734  Q
    |||||||||   | | | ||| || ||| | ||||| || | ||||||| | |||||||||||||||||||||||  |||||||||||||||||||||||    
T  14088863 tatcatgcctttgatcatatgctccaacggaaaatctaattcataacataacaattatcaacacaacataattttcgaacataacattaatcaaatataa 14088962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 890 - 1033
Target Start/End: Original strand, 40524171 - 40524314
Alignment:
Q  890 ccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccatgtcccagtccctc 989  Q
    |||||| ||||||| |||||||||||||||| || |||||| ||||| |||||||||||||||||| | ||||||||||||||||||  | ||||||||     
T  40524171 ccacccatgccaccatcagtagctccccgacgacagtaaactttcccttcatgcacctctttcaacgcgtcctccaaatgctgccattcctcagtccctt 40524270  T
Q  990 gcggcaccaggccactagacatcacatcatacacatggtctctg 1033  Q
     ||||||||| |||||   |||||||||||| |  |||||||||    
T  40524271 tcggcaccagaccacttctcatcacatcatagatgtggtctctg 40524314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 765 - 840
Target Start/End: Original strand, 14088967 - 14089042
Alignment:
Q  765 aaaattatccaaatgttacatcactaaaaattatccaagatattcaaacataacataattaaaaagtacaatcatc 840  Q
    |||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||| |||||||||||||    
T  14088967 aaaattatccaaatgttacatcactaaaaattattcaaattattcaaacataacataattaagaagtacaatcatc 14089042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 897 - 973
Target Start/End: Complemental strand, 5344670 - 5344594
Alignment:
Q  897 tgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgc 973  Q
    ||||||||| |||||||||||| | ||||||||| || ||||||||||||||||||||| |||||||||||||||||    
T  5344670 tgccacccttagtagctccccggcgacggtaaacttttccatcatgcacctctttcaacgcatcctccaaatgctgc 5344594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 897 - 969
Target Start/End: Original strand, 34660981 - 34661053
Alignment:
Q  897 tgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatg 969  Q
    |||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||  |||||||||||||    
T  34660981 tgccaccctcagtagctccccggcgacggtaaactttcccatcatgcacctctttcaaagcatcctccaaatg 34661053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 890 - 1033
Target Start/End: Original strand, 14089113 - 14089256
Alignment:
Q  890 ccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccatgtcccagtccctc 989  Q
    |||||| |||| || |||||||||| ||||| |||| |||||||||||| ||||||||||||||| || ||||||||||| ||||||    ||| |||||    
T  14089113 ccacccctgccgccatcagtagctctccgacgacggcaaaccttcccattatgcacctctttcaatacctcctccaaatgttgccattcttcagaccctc 14089212  T
Q  990 gcggcaccaggccactagacatcacatcatacacatggtctctg 1033  Q
    ||||||||   ||||| ||||||||| |  ||||||| ||||||    
T  14089213 gcggcaccgcaccactggacatcacagctcacacatgctctctg 14089256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 457 - 603
Target Start/End: Original strand, 40521773 - 40521919
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||| ||||||||||||||||||| | ||||  || ||||||||| |||||||||| ||||||||||  ||  | ||||||||||||| |||||     
T  40521773 taaatcaccccgttgaaagtcaacaaaagtgggtggtgaacgatggttccggattatataatccgaaaagtgataaacctgtccggattatataatccga 40521872  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctct 603  Q
    | |||| ||  ||| ||||| ||||||||| |||| | |||||||||    
T  40521873 aatgcatcagtacagaggcaaaagccatctattttggttgagcctct 40521919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 891 - 969
Target Start/End: Complemental strand, 36833222 - 36833144
Alignment:
Q  891 cacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatg 969  Q
    ||||| |||||||||||||||||||| ||| ||||||||  ||||||||| |||||||||||||  |||||||||||||    
T  36833222 cacccctgccaccctcagtagctccctgacgacggtaaattttcccatcacgcacctctttcaatgcatcctccaaatg 36833144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 457 - 517
Target Start/End: Complemental strand, 43097237 - 43097177
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataa 517  Q
    |||||||| ||||||||||||||||||||||  |||  |||||||||||||||||||||||    
T  43097237 taaatcacatcgttgaaagtcaacaaaaggggatggtgaatgatggttccagattatataa 43097177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 26221028 - 26221080
Alignment:
Q  342 atttttgcacttcaaccaccctgatggatgatgatgtcaattatgaatagatg 394  Q
    ||||| ||||||||||||||||||||||||||||||||| || | ||||||||    
T  26221028 attttggcacttcaaccaccctgatggatgatgatgtcagttttaaatagatg 26221080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 897 - 976
Target Start/End: Complemental strand, 43096934 - 43096855
Alignment:
Q  897 tgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccat 976  Q
    ||||||||| ||||||||| || | ||| ||||| || ||||||||||||||||||||   |||||| ||||||||||||    
T  43096934 tgccacccttagtagctcctcggcgacgataaacttttccatcatgcacctctttcaaagtatcctcaaaatgctgccat 43096855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 324 - 390
Target Start/End: Complemental strand, 42279662 - 42279596
Alignment:
Q  324 tttcggatttattcatggatttttgcacttcaaccaccctgatggatgatgatgtcaattatgaata 390  Q
    |||||||||||||  || ||||| |||| ||| ||||||||||||||||||||| || |||||||||    
T  42279662 tttcggatttattagtgtattttggcacatcatccaccctgatggatgatgatgccagttatgaata 42279596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 411
Target Start/End: Original strand, 40521648 - 40521728
Alignment:
Q  330 atttattcatggatttttgcacttcaaccaccctgatggatgatgatgtcaattatgaatagatgaatgcagattacataat 411  Q
    |||||||| |||||||| |||||||| | ||| |||||||||| ||||||| | |||||||||||||| | ||||| |||||    
T  40521648 atttattcgtggattttggcacttcatc-accttgatggatgaagatgtcagtgatgaatagatgaatccggattatataat 40521728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 457 - 517
Target Start/End: Original strand, 34660554 - 34660613
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataa 517  Q
    ||||||||| |||||||||| |||||||||| ||||  |||||||||||| ||||||||||    
T  34660554 taaatcaccccgttgaaagtaaacaaaaggg-gtggtgaatgatggttccggattatataa 34660613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 457 - 511
Target Start/End: Original strand, 44997245 - 44997299
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagatt 511  Q
    ||||||||| ||||||||||||||||||| | | ||  |||||||||||||||||    
T  44997245 taaatcaccccgttgaaagtcaacaaaagagggcggtgaatgatggttccagatt 44997299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 3e-72; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 457 - 815
Target Start/End: Original strand, 26114799 - 26115150
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||| ||||||||||||||||||||| ||||  ||||||||||||||||||||||| | | ||  |   ||  | ||||||| | ||| ||| ||    
T  26114799 taaatcaccccgttgaaagtcaacaaaagggagtggtgaatgatggttccagattatataatctggaatatcataaatctgtccggaatttataatctgg 26114898  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgt 656  Q
    | |||| ||  ||| |||||| ||||||||||||| |||||||||||||||||||||||||| | || ||||||| ||||||||||||||| ||||||||    
T  26114899 aatgcatcagtacagaggcaggagccatctgtttttgctgagcctctgttttggcgcattttgcttgcttccaaacagacatatcatgccgctgacatgt 26114998  T
Q  657 tctaacagtaaatcaaacttataacattaaaattatcaacacaacataattttg-aaacataacattaatcaaatataattaaaaattatccaagattac 755  Q
    |||||||||||| | || ||||||        | ||||||| || ||||||||| |||||| ||||||||||||  |||||||||||||| |||||||||    
T  26114999 tctaacagtaaaacgaagttataa--------tcatcaacaaaatataattttgcaaacatgacattaatcaaacgtaattaaaaattattcaagattac 26115090  T
Q  756 gtaacattaaaaattatccaaatgttacatcactaaaaattatccaagatattcaaacat 815  Q
     |||||||||||||||| |||||||| |||||| |||||||||||||||| |||||||||    
T  26115091 ataacattaaaaattattcaaatgtttcatcaccaaaaattatccaagatgttcaaacat 26115150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 457 - 815
Target Start/End: Complemental strand, 50547759 - 50547408
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||| | ||||||||||||||||||| ||||  |||||||||||| |||||||||| | | ||  |   ||  | || |||| | ||| ||||||    
T  50547759 taaatcaccccattgaaagtcaacaaaagggggtggtgaatgatggttccggattatataatctggaatctcataaatctgttcggaatttataatccgg 50547660  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgt 656  Q
    | |||| ||  ||| |||||||||| ||||||||| |||||||||||||||||||||||||| | || ||||||| ||||||||||||||| | ||||||    
T  50547659 aatgcatcagtacagaggcagaagctatctgtttttgctgagcctctgttttggcgcattttgcttgcttccaaacagacatatcatgccgctaacatgt 50547560  T
Q  657 tctaacagtaaatcaaacttataacattaaaattatcaacacaacataattttg-aaacataacattaatcaaatataattaaaaattatccaagattac 755  Q
    ||||| |||||||  || ||||||        | ||||||| || ||||||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  50547559 tctaaaagtaaatagaagttataa--------tcatcaacaaaatataattttgcaaacataacattaatcaaacgtaattaaaaattatccaagattac 50547468  T
Q  756 gtaacattaaaaattatccaaatgttacatcactaaaaattatccaagatattcaaacat 815  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  50547467 ataacattaaaaattatccaaatgttacatcacaaaaaattatccaagatgttcaaacat 50547408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 572 - 815
Target Start/End: Original strand, 43626754 - 43626990
Alignment:
Q  572 aggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgttctaacagtaaatca 671  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| | || ||||||| ||||||||||||||| ||||||||||| |||||||||      
T  43626754 aggcagaagccatctgtttttgttgagcctctgttttggcgcattttgcttgcttccaaacagacatatcatgccgctgacatgttcttacagtaaattg 43626853  T
Q  672 aacttataacattaaaattatcaacacaacataattttg-aaacataacattaatcaaatataattaaaaattatccaagattacgtaacattaaaaatt 770  Q
    || ||||||        | ||||||| || ||||||||  |||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||    
T  43626854 aagttataa--------tcatcaacaaaatataattttccaaacataacattaatcaaacgtaattaaaaattatccaagattacataacattaaaaatt 43626945  T
Q  771 atccaaatgttacatcactaaaaattatccaagatattcaaacat 815  Q
    |||||||||||||||||| |||||||||||||||| |||||||||    
T  43626946 atccaaatgttacatcaccaaaaattatccaagatgttcaaacat 43626990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 601 - 815
Target Start/End: Complemental strand, 35067329 - 35067121
Alignment:
Q  601 tctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgttctaacagtaaatcaaacttataacattaaaattatcaacacaa 700  Q
    |||||||||||||||||| | || ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||       || ||||||| ||    
T  35067329 tctgttttggcgcattttgcttgcttccaaacagacatatcatgccgctgacatgttctaacagtaaatcgaacttataa-------atcatcaacaaaa 35067237  T
Q  701 cataattttg-aaacataacattaatcaaatataattaaaaattatccaagattacgtaacattaaaaattatccaaatgttacatcactaaaaattatc 799  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||| | | ||||  |||    
T  35067236 cataattttgcaaacataacattaatcaaatataattaaaaattatccaagattacataacattcaaaattatccaagtgttacataattcaaaagcatc 35067137  T
Q  800 caagatattcaaacat 815  Q
    ||| ||||||||||||    
T  35067136 caaaatattcaaacat 35067121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 315 - 744
Target Start/End: Complemental strand, 10888029 - 10887599
Alignment:
Q  315 gaatattagtttcggatttattcatggatttttgcacttcaaccaccctgatggatgatgatgtcaattatgaatagatgaatgcagattacataatccg 414  Q
    |||||||| || ||||||||||| |||||||| |||||||| |||| || |||||||||||||  | ||||||||| |||||| | ||||| ||||||||    
T  10888029 gaatattaattccggatttattcgtggattttggcacttcatccactctaatggatgatgatgagagttatgaatatatgaattcggattatataatccg 10887930  T
Q  415 tatagattgtacaatatccagannnnnnnaacgcgaaatggttaaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattata 514  Q
     | ||  |  | ||  ||| ||       | | ||||| |  ||||||||| ||||||||||||||||||||| ||||  || ||||||||  |||||||    
T  10887929 aaaagggtagataacttccggattatataatc-cgaaaagtgtaaatcaccccgttgaaagtcaacaaaagggggtggtgaacgatggttctggattata 10887831  T
Q  515 taaaccgaaaagtgtcaatgcagtccggattatattatccggagtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgca 614  Q
    ||| ||| ||||||   |  | ||| ||||||||| ||||||| |||| ||  ||| | ||||||||||||||||||  | || ||||||||||||| ||    
T  10887830 taatccgtaaagtggttaacctgtctggattatataatccggactgcatcagtacagaagcagaagccatctgttttgaccgaacctctgttttggcaca 10887731  T
Q  615 ttttccatgattccaaagagacatatcatgccggtgac---atgttctaacagtaa-atcaaacttataacattaaaattatcaacacaacataattttg 710  Q
    ||  |  || ||| ||| ||||||| ||||||||| ||   ||||||||||||||| ||||| |||||||| | | |||||||||||||||||||||||     
T  10887730 ttagct-tgcttctaaatagacataccatgccggttaccatatgttctaacagtaacatcaa-cttataacgtaacaattatcaacacaacataattttc 10887633  T
Q  711 aaacataacattaatcaaatataattaaaaatta 744  Q
    ||||| ||||||||||||||||||||||||||||    
T  10887632 aaacaaaacattaatcaaatataattaaaaatta 10887599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 881 - 1005
Target Start/End: Complemental strand, 10887094 - 10886970
Alignment:
Q  881 ccacctctgccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccatgtcc 980  Q
    |||||| || ||||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| |||||||||||||||| |||  |     
T  10887094 ccacctttggcacccctgccaccctcagtagctccctgacgacggtaaactttcccatcatgcacctctttcaacgcatcctccaaatgctgtcattcct 10886995  T
Q  981 cagtccctcgcggcaccaggccact 1005  Q
    ||||||||  ||||||||| |||||    
T  10886994 cagtccctttcggcaccagaccact 10886970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 457 - 608
Target Start/End: Original strand, 42093250 - 42093401
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||| ||||||||||||||||||| | ||||  || ||||||||| |||||||||| ||| ||||||  ||  | ||||| ||||||| ||||||    
T  42093250 taaatcaccccgttgaaagtcaacaaaagtgggtggtgaacgatggttccggattatataatccggaaagtgataaacctgtccgaattatataatccgg 42093349  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgtttt 608  Q
    | |||| ||  ||| |||||||||||||||||||| ||||||||||||||||    
T  42093350 aatgcatcagtacagaggcagaagccatctgttttggctgagcctctgtttt 42093401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 457 - 608
Target Start/End: Original strand, 32295876 - 32296027
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||| ||||||||||||||||||| | ||||  || || |||||| |||||||||| ||| ||||||  ||  | ||||||||||||| ||| ||    
T  32295876 taaatcaccccgttgaaagtcaacaaaagtgggtggtgaacgacggttccggattatataatccggaaagtgataaacctgtccggattatataatctgg 32295975  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgtttt 608  Q
    | |||| ||  ||| |||||||||||||||||||| || |||||||||||||    
T  32295976 aatgcatcagtacagaggcagaagccatctgttttggccgagcctctgtttt 32296027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 890 - 1005
Target Start/End: Original strand, 42093636 - 42093751
Alignment:
Q  890 ccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccatgtcccagtccctc 989  Q
    |||||| ||||| |||||||||||||||||| || |||||| ||||||||||||||||||||||||   ||||||||||||||||||  |  |||||||     
T  42093636 ccacccatgccatcctcagtagctccccgacgacagtaaactttcccatcatgcacctctttcaacgtgtcctccaaatgctgccattccttagtccctt 42093735  T
Q  990 gcggcaccaggccact 1005  Q
     ||||||||| |||||    
T  42093736 tcggcaccagaccact 42093751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 890 - 971
Target Start/End: Original strand, 32296241 - 32296322
Alignment:
Q  890 ccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgct 971  Q
    |||||| ||||||| ||| |||||||||||| ||||||||| |||||||||||||||||||||||| | |||||||||||||    
T  32296241 ccacccctgccaccatcaatagctccccgacgacggtaaactttcccatcatgcacctctttcaacgcgtcctccaaatgct 32296322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 897 - 973
Target Start/End: Original strand, 28792416 - 28792492
Alignment:
Q  897 tgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgc 973  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||||| |||||||||    
T  28792416 tgccaccatcagtagctccccgacgacggtaaactttcccatcatgcacctctttcaacgcgtcctctaaatgctgc 28792492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 890 - 976
Target Start/End: Original strand, 26115208 - 26115294
Alignment:
Q  890 ccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccat 976  Q
    |||||| | |||||||||||||||||||| | ||| ||||| |||||||||||||||||||||||  |||| |||||||||||||||    
T  26115208 ccaccccttccaccctcagtagctccccggcgacgataaactttcccatcatgcacctctttcaaagcatcatccaaatgctgccat 26115294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 316 - 608
Target Start/End: Original strand, 28791904 - 28792194
Alignment:
Q  316 aatattagtttcggatttattcatggatttttgcacttcaaccaccctgatggatgatgatgtcaattatgaatagatgaatgcagattacataatccgt 415  Q
    ||||||| |||||||||||||| |||||||| ||| |||| | ||| |||||||||| ||||||| | |||||||||||||| | ||||| ||||||||     
T  28791904 aatattaatttcggatttattcgtggattttggcatttcatc-accatgatggatgaagatgtcagtgatgaatagatgaattcggattatataatccga 28792002  T
Q  416 atagattgtacaatatccagannnnnnnaacgcgaaatggttaaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatat 515  Q
    | |  || ||  || ||| ||       | | ||||  |  ||||||||| ||||||||||||||||||| | ||||  || || |||||||||||||||    
T  28792003 acattttatatcatttccggattatataatc-cgaatagtgtaaatcaccccgttgaaagtcaacaaaagtgagtggtgaacgacggttccagattatat 28792101  T
Q  516 aaaccgaaaagtgtcaatgcagtccggattatattatccggagtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgtttt 608  Q
    || ||  ||||||  ||    || |||||||||| ||||||| |||| ||  ||| |||||||||||||||||||| | |||||||| |||||    
T  28792102 aatccagaaagtgataaacatgttcggattatataatccggaatgcatcagtacagaggcagaagccatctgttttggttgagcctccgtttt 28792194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 457 - 591
Target Start/End: Complemental strand, 35067456 - 35067322
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||| ||||||||||||||||||| | ||||  || ||||||||| ||||| |||| ||| || ||   ||  | ||||||||||||| ||||||    
T  35067456 taaatcaccccgttgaaagtcaacaaaagtgggtggtgaacgatggttccggattacataatccggaatgttataaatctgtccggattatataatccgg 35067357  T
Q  557 agtgcaccaccacaaaggcagaagccatctgtttt 591  Q
    | |||| ||  ||| ||||||||||||||||||||    
T  35067356 actgcatcagtacagaggcagaagccatctgtttt 35067322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 897 - 967
Target Start/End: Complemental strand, 50547355 - 50547285
Alignment:
Q  897 tgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaa 967  Q
    ||||||||||||||||| ||||   ||||||||| |||||||||||||||||||||||  |||||||||||    
T  50547355 tgccaccctcagtagcttcccggtgacggtaaactttcccatcatgcacctctttcaaagcatcctccaaa 50547285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 736 - 785
Target Start/End: Complemental strand, 10887232 - 10887183
Alignment:
Q  736 taaaaattatccaagattacgtaacattaaaaattatccaaatgttacat 785  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  10887232 taaaaattatccaagattacataacattaaaaattatccaagtgttacat 10887183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 316 - 413
Target Start/End: Original strand, 32295740 - 32295836
Alignment:
Q  316 aatattagtttcggatttattcatggatttttgcacttcaaccaccctgatggatgatgatgtcaattatgaatagatgaatgcagattacataatcc 413  Q
    ||||||| || || |||||||| |||||||| |||||||| | ||||| |||||||| ||||| ||| |||||||||||||| | ||||| |||||||    
T  32295740 aatattaattccgaatttattcgtggattttggcacttcatc-accctcatggatgaagatgtaaatgatgaatagatgaatccggattatataatcc 32295836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 353 - 419
Target Start/End: Original strand, 42093181 - 42093247
Alignment:
Q  353 tcaaccaccctgatggatgatgatgtcaattatgaatagatgaatgcagattacataatccgtatag 419  Q
    |||| ||||||||||||||| ||||||| | |||||||||||||| | ||||| |||||||| ||||    
T  42093181 tcaatcaccctgatggatgaagatgtcagtaatgaatagatgaattcggattatataatccgaatag 42093247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 882 - 969
Target Start/End: Original strand, 43627037 - 43627124
Alignment:
Q  882 cacctctgccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatg 969  Q
    |||| ||||||||  ||||||||||| |||||||| |   |||| |||| ||| |||||||||||||||||||  ||| |||||||||    
T  43627037 cacccctgccacctctgccaccctcaatagctccctggtgacggcaaactttctcatcatgcacctctttcaaagcatactccaaatg 43627124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 257
Target Start/End: Original strand, 3470175 - 3470204
Alignment:
Q  228 tattacttttcccaccctatgtctttcctt 257  Q
    ||||||||||||||||||||||||||||||    
T  3470175 tattacttttcccaccctatgtctttcctt 3470204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 1e-71; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 538 - 815
Target Start/End: Complemental strand, 14966308 - 14966038
Alignment:
Q  538 tccggattatattatccggagtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagaca 637  Q
    |||| ||||||| ||||||| |||| ||  ||| |||||||||||||||||||| |||||||||||||||||||||||||| | || ||||||| |||||    
T  14966308 tccgcattatataatccggaatgcatcagtacagaggcagaagccatctgtttttgctgagcctctgttttggcgcattttgcttgcttccaaacagaca 14966209  T
Q  638 tatcatgccggtgacatgttctaacagtaaatcaaacttataacattaaaattatcaacacaacataattttg-aaacataacattaatcaaatataatt 736  Q
    |||||||||  |||||||||||||||||||||| |||||||        ||| ||||||| || ||||||||| |||||||| ||||| ||||  |||||    
T  14966208 tatcatgccactgacatgttctaacagtaaatcgaacttat--------aatcatcaacaaaatataattttgcaaacataatattaaccaaacgtaatt 14966117  T
Q  737 aaaaattatccaagattacgtaacattaaaaattatccaaatgttacatcactaaaaattatccaagatattcaaacat 815  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  14966116 aaaaattatccaagattacataacattaaaaattatccaaatgttacatcaccaaaaattacccaagatgttcaaacat 14966038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 538 - 815
Target Start/End: Complemental strand, 15395780 - 15395510
Alignment:
Q  538 tccggattatattatccggagtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagaca 637  Q
    |||| ||||||| ||||||| |||| ||  ||| |||||||||||||||||||| |||||||||||||||||||||||||| | || ||||||| |||||    
T  15395780 tccgcattatataatccggaatgcatcagtacagaggcagaagccatctgtttttgctgagcctctgttttggcgcattttgcttgcttccaaacagaca 15395681  T
Q  638 tatcatgccggtgacatgttctaacagtaaatcaaacttataacattaaaattatcaacacaacataattttg-aaacataacattaatcaaatataatt 736  Q
    |||||||||  |||||||||||||||||||||| |||||||        ||| ||||||| || ||||||||| |||||||| ||||| ||||  |||||    
T  15395680 tatcatgccactgacatgttctaacagtaaatcgaacttat--------aatcatcaacaaaatataattttgcaaacataatattaaccaaacgtaatt 15395589  T
Q  737 aaaaattatccaagattacgtaacattaaaaattatccaaatgttacatcactaaaaattatccaagatattcaaacat 815  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  15395588 aaaaattatccaagattacataacattaaaaattatccaaatgttacatcaccaaaaattacccaagatgttcaaacat 15395510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 601 - 815
Target Start/End: Complemental strand, 39975087 - 39974880
Alignment:
Q  601 tctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgttctaacagtaaatcaaacttataacattaaaattatcaacacaa 700  Q
    |||||||||||||||||| | || ||||||| ||| |||||||| || |||||||||||||||||||||| || ||||||        | ||||||| ||    
T  39975087 tctgttttggcgcattttgcttgcttccaaacagatatatcatgtcgctgacatgttctaacagtaaatcgaagttataa--------tcatcaacaaaa 39974996  T
Q  701 cataattttg-aaacataacattaatcaaatataattaaaaattatccaagattacgtaacattaaaaattatccaaatgttacatcactaaaaattatc 799  Q
     ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  39974995 tataattttgcaaacataacattaatcaaatataattaaaaattatccaagattacataacattaaaaattatccaaatgttacatcaccaaaaattatc 39974896  T
Q  800 caagatattcaaacat 815  Q
    |||||| |||||||||    
T  39974895 caagatgttcaaacat 39974880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 457 - 815
Target Start/End: Original strand, 46270050 - 46270402
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    |||||||||  |||||||||||||||||||| ||||  ||||||||||||  ||||||||| ||| ||  |   ||  | ||||||| | ||| ||| ||    
T  46270050 taaatcacccagttgaaagtcaacaaaagggggtggtgaatgatggttccgaattatataatccggaatctcataaatctgtccggaatttataatctgg 46270149  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgt 656  Q
    | |||| ||  ||||||||||||| |||||||||| ||||||||||| |||||||||||||| | || ||||||| ||||||||||||||| ||||||||    
T  46270150 aatgcatcagtacaaaggcagaagtcatctgttttggctgagcctctattttggcgcattttgcttgcttccaaacagacatatcatgccgctgacatgt 46270249  T
Q  657 tctaacagtaaatcaaacttataacattaaaattatcaacacaacataattttg-aaacataacattaatcaaatataattaaaaatta--tccaagatt 753  Q
    |||||||||||||| || ||||        ||| ||||||| || ||||||||| |||||||||| ||||||||||||||||||||| |     ||||||    
T  46270250 tctaacagtaaatcgaagttat--------aatcatcaacaaaatataattttgcaaacataaca-taatcaaatataattaaaaatgaataataagatt 46270340  T
Q  754 acgtaacattaaaaattatccaaatgttacatcactaaaaattatccaagatattcaaacat 815  Q
    || ||||||| |||||||||||| |||||||| | | ||||  |||||| ||||||||||||    
T  46270341 acataacattcaaaattatccaagtgttacataattcaaaagcatccaaaatattcaaacat 46270402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 461 - 815
Target Start/End: Complemental strand, 47249486 - 47249149
Alignment:
Q  461 tcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccggagtg 560  Q
    ||||| || |||||||||||||||||| ||||  |||||||||||  |||||||||| ||| ||  |   ||  | ||||| | | ||| ||||||| ||    
T  47249486 tcaccgcggtgaaagtcaacaaaaggg-gtggtgaatgatggttctggattatataatccggaatctcataaatctgtccgaaatttataatccggaatg 47249388  T
Q  561 caccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgttcta 660  Q
    || ||  ||| |||||||||||||||||||| ||||||||||| |||||||||||||| | || ||||||| | ||||||||||| | ||||||||||||    
T  47249387 catcagtacagaggcagaagccatctgtttttgctgagcctctattttggcgcattttgcttgcttccaaacaaacatatcatgctgctgacatgttcta 47249288  T
Q  661 acagtaaatcaaacttataacattaaaattatcaacacaacataattttg-aaacataacattaatcaaatataattaaaaattatccaagattacgtaa 759  Q
    ||||||||||||| ||||        ||| ||||||| || ||||||||| |||||||||||| ||||||  ||||||||||| ||| |          |    
T  47249287 acagtaaatcaaagttat--------aatcatcaacaaaatataattttgcaaacataacattgatcaaacgtaattaaaaatgatcta---------ta 47249205  T
Q  760 cattaaaaattatccaaatgttacatcactaaaaattatccaagatattcaaacat 815  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  47249204 cattaaaaattatccaaatgttacatcactaaaaattatacaagatgttcaaacat 47249149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 901 - 1005
Target Start/End: Original strand, 46270471 - 46270575
Alignment:
Q  901 accctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccatgtcccagtccctcgcggcaccagg 1000  Q
    ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||  |||||||||||||||| |||  | ||||||||  |||||| ||     
T  46270471 accctcagtagcttcccgacgacggtaaactttcccatcatgcacctctttcaaagcatcctccaaatgctgtcattcctcagtccctttcggcacgaga 46270570  T
Q  1001 ccact 1005  Q
    |||||    
T  46270571 ccact 46270575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 897 - 976
Target Start/End: Complemental strand, 14965962 - 14965883
Alignment:
Q  897 tgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccat 976  Q
    |||||||||||||||||||| | | | ||||||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  14965962 tgccaccctcagtagctccctggcgatggtaaactttcccatcatgcacctctttcaaagcatcctccaaatgctgccat 14965883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 897 - 976
Target Start/End: Complemental strand, 15395434 - 15395355
Alignment:
Q  897 tgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccat 976  Q
    |||||||||||||||||||| | | | ||||||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  15395434 tgccaccctcagtagctccctggcgatggtaaactttcccatcatgcacctctttcaaagcatcctccaaatgctgccat 15395355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 897 - 976
Target Start/End: Complemental strand, 39974815 - 39974736
Alignment:
Q  897 tgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccat 976  Q
    |||||||||||||||||||||| | || |||||| ||| |||||||||||||||||||  ||||||||||||||||||||    
T  39974815 tgccaccctcagtagctccccggcgacagtaaactttctcatcatgcacctctttcaaagcatcctccaaatgctgccat 39974736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 457 - 815
Target Start/End: Original strand, 31187285 - 31187621
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||||| |||||||||||||||||||| |||  || ||||||||| |||||||||| || | |  |   ||  | ||| ||||| ||| ||||||    
T  31187285 taaatcacctcattgaaagtcaacaaaagggtatggtgaacgatggttccggattatataatccaacatcttataaatctgtctggattttataatccgg 31187384  T
Q  557 agtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgcattttccatgattccaaagagacatatcatgccggtgacatgt 656  Q
    | |||| ||  ||| ||||||||||||                 |||||||||||||||||| | || || |||| |||||||||||| || ||||||||    
T  31187385 aatgcatcagtacagaggcagaagcca-----------------tctgttttggcgcattttgcttgctttcaaacagacatatcatgtcgctgacatgt 31187467  T
Q  657 tctaacagtaaatcaaacttataacattaaaattatcaacacaacataa-ttttgaaacataacattaatcaaatataattaaaaatta--tccaagatt 753  Q
    | ||| |||||||| || ||||        ||| ||||||| || |||| |||| |||||||||||||||||||||||||||||||| |    |||||||    
T  31187468 tttaatagtaaatcgaagttat--------aatcatcaacaaaatataatttttcaaacataacattaatcaaatataattaaaaatgaataacaagatt 31187559  T
Q  754 acgtaacattaaaaattatccaaatgttacatcactaaaaattatccaagatattcaaacat 815  Q
    || ||||||| |||||||||||| |||||||| | | ||||  |||||| ||||||||||||    
T  31187560 acataacattcaaaattatccaagtgttacataattcaaaagcatccaaaatattcaaacat 31187621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 897 - 976
Target Start/End: Complemental strand, 47249061 - 47248982
Alignment:
Q  897 tgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctgccat 976  Q
    |||||||||||||||||||||| | ||||||||| ||| |||||||||||| ||||||  |||||| |||||||||||||    
T  47249061 tgccaccctcagtagctccccggcgacggtaaactttctcatcatgcacctatttcaaagcatccttcaaatgctgccat 47248982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 765 - 840
Target Start/End: Complemental strand, 28245911 - 28245835
Alignment:
Q  765 aaaattatccaaatgttacatcactaaaaattatccaagatattcaaaca-taacataattaaaaagtacaatcatc 840  Q
    |||||||| ||||| || ||| ||||||||| |||||| ||||||||||| ||||||||||| ||| ||||||||||    
T  28245911 aaaattatgcaaatatttcataactaaaaatcatccaaaatattcaaacattaacataattataaattacaatcatc 28245835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 514 - 617
Target Start/End: Complemental strand, 28246136 - 28246033
Alignment:
Q  514 ataaaccgaaaagtgtcaatgcagtccggattatattatccggagtgcaccaccacaaaggcagaagccatctgttttagctgagcctctgttttggcgc 613  Q
    |||| |||||||||||  | | |||||||||||||| ||||| | |||| |  ||||||||||||||||| ||||||| | |||| |||| ||||| |||    
T  28246136 ataatccgaaaagtgttgaaggagtccggattatataatccgaactgcatcggcacaaaggcagaagccacctgttttggttgagactctattttgacgc 28246037  T
Q  614 attt 617  Q
    ||||    
T  28246036 attt 28246033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 457 - 517
Target Start/End: Complemental strand, 14966355 - 14966295
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataa 517  Q
    |||||||||  |||||||||||||||||||| ||||  ||||||||||||  |||||||||    
T  14966355 taaatcaccctgttgaaagtcaacaaaagggggtggtgaatgatggttccgcattatataa 14966295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 457 - 517
Target Start/End: Complemental strand, 15395827 - 15395767
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataa 517  Q
    |||||||||  |||||||||||||||||||| ||||  ||||||||||||  |||||||||    
T  15395827 taaatcaccctgttgaaagtcaacaaaagggggtggtgaatgatggttccgcattatataa 15395767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 457 - 517
Target Start/End: Complemental strand, 39975214 - 39975154
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataa 517  Q
    ||||||||| ||||||||||||||||||||| |||   |||||||||| | ||||||||||    
T  39975214 taaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggtttcggattatataa 39975154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 5e-65; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 653 - 819
Target Start/End: Complemental strand, 6941068 - 6940902
Alignment:
Q  653 atgttctaacagtaaatcaaacttataacattaaaattatcaacacaacataattttgaaacataacattaatcaaatataattaaaaattatccaagat 752  Q
    |||||||||| ||||||  |||||||||| | | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  6941068 atgttctaaccgtaaattcaacttataacgtaagaattatcaacacaacataattttcaaacataacattaatcaaatataattaaaagttatccaagat 6940969  T
Q  753 tacgtaacattaaaaattatccaaatgttacatcactaaaaattatccaagatattcaaacataaca 819  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6940968 tacataacattaaaaattatccaaatgttacatcactaaaaattatccaagatgttcaaacataaca 6940902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 290 - 414
Target Start/End: Complemental strand, 6941380 - 6941257
Alignment:
Q  290 gattatataattcgaactcatttcagaatattagtttcggatttattcatggatttttgcacttcaaccaccctgatggatgatgatgtcaattatgaat 389  Q
    ||||||||||| ||||| |||| | |||||| | || |||||||||||||||||||| ||||||| | |||||||||||||||||||| || ||||||||    
T  6941380 gattatataatccgaacccattccggaatatcaattccggatttattcatggattttggcacttc-atcaccctgatggatgatgatgccagttatgaat 6941282  T
Q  390 agatgaatgcagattacataatccg 414  Q
    ||||| || |||| || ||||||||    
T  6941281 agatggattcagagtatataatccg 6941257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 900 - 969
Target Start/End: Original strand, 3141960 - 3142029
Alignment:
Q  900 caccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatg 969  Q
    ||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| |||||||||||||    
T  3141960 caccctcagtagctccccgacgacggtaaacttttccatcatgcacctctttcaacgcatcctccaaatg 3142029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 457 - 591
Target Start/End: Complemental strand, 6941249 - 6941115
Alignment:
Q  457 taaatcacctcgttgaaagtcaacaaaagggtgtgggaaatgatggttccagattatataaaccgaaaagtgtcaatgcagtccggattatattatccgg 556  Q
    ||||||||| |||||||||||| |||||||| ||||  || ||||||||| |||||||||| | ||||||||  ||| | ||||| |||  || ||||||    
T  6941249 taaatcaccccgttgaaagtcagcaaaagggggtggtgaacgatggttccggattatataatctgaaaagtgataatcctgtccgaattgcataatccgg 6941150  T
Q  557 agtgcaccaccacaaaggcagaagccatctgtttt 591  Q
    | |||| ||  ||| ||||||||||||||||||||    
T  6941149 actgcatcagtacagaggcagaagccatctgtttt 6941115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 854 - 954
Target Start/End: Complemental strand, 13286292 - 13286180
Alignment:
Q  854 cccctaataactacacccgtaccaccgccacctctgccacc-----------ct-tgccaccctcagtagctccccgacaacggtaaaccttcccatcat 941  Q
    |||||||||||||||||||||||||||||| ||||||||||           || ||||||||||| |||||||||||  ||||||||| ||||||||||    
T  13286292 cccctaataactacacccgtaccaccgccaactctgccaccacctcttccaactctgccaccctcactagctccccgatgacggtaaactttcccatcat 13286193  T
Q  942 gcacctctttcaa 954  Q
    |||||||||||||    
T  13286192 gcacctctttcaa 13286180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 897 - 972
Target Start/End: Complemental strand, 6940823 - 6940748
Alignment:
Q  897 tgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaacacatcctccaaatgctg 972  Q
    |||||||||||||||||||||||  |||| |||| |||||||| ||||||||||||||| | ||||| ||||||||    
T  6940823 tgccaccctcagtagctccccgatgacggcaaactttcccatcttgcacctctttcaacgcttcctcgaaatgctg 6940748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 856 - 894
Target Start/End: Complemental strand, 6940887 - 6940849
Alignment:
Q  856 cctaataactacacccgtaccaccgccacctctgccacc 894  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  6940887 cctaataactacacccgtaccaccgcgacctctgccacc 6940849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 881 - 954
Target Start/End: Original strand, 5969 - 6042
Alignment:
Q  881 ccacctctgccacccttgccaccctcagtagctccccgacaacggtaaaccttcccatcatgcacctctttcaa 954  Q
    ||||||||| ||||| ||||||||||||| |||||||||| | ||||| ||||  |||||||||||||||||||    
T  5969 ccacctctggcacccctgccaccctcagttgctccccgacgatggtaacccttttcatcatgcacctctttcaa 6042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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