View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_low_13 (Length: 502)
Name: NF10070_low_13
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_13 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 41573196 - 41572939
Alignment:
| Q |
16 |
aacacaacggataccaattggacctttgtttggaggggcccctttttgtttgggagaatgagttactgacggaattattagaggatttggagagttttag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41573196 |
aacacaacggataccaattggacctttgtttggaggggcccctttttgtttgggagaatgagttactgacggaattattagaggatttggagagttttag |
41573097 |
T |
|
| Q |
116 |
aggctctgtagaagatgatatttgttggtggagaatggagggtaaaggggttttcatggtgaaatctatgtataagaagttggaggtgttgatgctagcg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41573096 |
aggctctgtagaagatgatatttgttggtggagaatggagggtaaaggggttttcatggtgaaatctatgtataagaagttggaggtgttgatgctagcg |
41572997 |
T |
|
| Q |
216 |
gaaaccacggtctcggttgccttttcttggaagttgtttcatgacaggatccggacga |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41572996 |
gaaaccacggtctcggttgccttttcttggaagttgtttcatgacaggatcccgacga |
41572939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 265 - 496
Target Start/End: Complemental strand, 41572907 - 41572676
Alignment:
| Q |
265 |
tccggacgattcggtgaattgtgttttgtgtgaggggaatccggagtcggcgagtcacttgttcattcaatgtgtgtttgctatggaggtttggaatgac |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41572907 |
tccggacgattcggtgaattgtgttttgtgtgaggggaatccggagtcggcgagtcacttgttcattcaatgtgtgtttgctatggaggtttggaatggc |
41572808 |
T |
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| Q |
365 |
gtgttgaggtggctatggagcttccggttaacatgtttctgctgtggaaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgttt |
464 |
Q |
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| T |
41572807 |
gtgttgaggtggctatggagcttccggttaacatgtttctgctgtgggaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgttt |
41572708 |
T |
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| Q |
465 |
gatttggcacgccgtagtgtggaatttattga |
496 |
Q |
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||||||||| |||||||||||||||||||||| |
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| T |
41572707 |
gatttggcatgccgtagtgtggaatttattga |
41572676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 4e-67; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 24 - 234
Target Start/End: Original strand, 27753251 - 27753459
Alignment:
| Q |
24 |
ggataccaattggacctttgtttggaggggcccc-tttttgtttgggagaatgagttactgacggaattattagaggatttggagagttttagaggctct |
122 |
Q |
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||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |
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| T |
27753251 |
ggataccaattggacctttctttggaggcgccccctttttgtttgggagaatgagttactgtcggaattattagaagatttggagagtttcagaggctct |
27753350 |
T |
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| Q |
123 |
gtagaagatgatatttgttggtggagaatggagggtaaaggggttttcatggtgaaatctatgtataagaagttggaggtgttgatgctagcggaaacca |
222 |
Q |
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||||||||| |||||| ||||||||| |||||||||| ||||| ||| |||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
27753351 |
atagaagatggtatttggtggtggagattggagggtaacggggtgttctcagtgaaatctatgtataagaagttgga---gttgttgctagcggaaacca |
27753447 |
T |
|
| Q |
223 |
cggtctcggttg |
234 |
Q |
| |
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|||||||||||| |
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| T |
27753448 |
cggtctcggttg |
27753459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 268 - 493
Target Start/End: Original strand, 27753590 - 27753823
Alignment:
| Q |
268 |
ggacgattcggtgaattgtgttttgtgtgaggggaatccggagtcggcgagtcacttgttcattcaatgtgtgtttgctatggaggtttggaatgacgtg |
367 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||| ||||||| ||| |
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| T |
27753590 |
ggacgattcggtgaattgtgttctgtgtgaggggaatccggagtcggcaagtcactt-ttcattcaatgctcctttgctaaggaggggtggaatggggtg |
27753688 |
T |
|
| Q |
368 |
ttgaggtgg---------ctatggagcttccggttaacatgtttctgctgtggaaggaatggaatgtggcagcagggagtaacaagatccgtaagggatt |
458 |
Q |
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||||||| | ||||||||||| | || |||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27753689 |
ctgaggtgttagagatgaccttggagcttccgatcaatttgtttctgctgtgggaggattggaatgtggcagcagggagtaataagatccgtaagggatt |
27753788 |
T |
|
| Q |
459 |
ccgtttgatttggcacgccgtagtgtggaatttat |
493 |
Q |
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| T |
27753789 |
ccggttgatttggcacgccgtagtgtggaatttat |
27753823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 265
Target Start/End: Original strand, 27753512 - 27753547
Alignment:
| Q |
230 |
ggttgccttttcttggaagttgtttcatgacaggat |
265 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
27753512 |
ggttgtcttttcttggaagttgtttcatgacaggat |
27753547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 21942781 - 21942577
Alignment:
| Q |
16 |
aacacaacggataccaattggacctttgtttggaggggccc-ctttttgtttgggagaatgagttactgacggaattattagaggatttggagagtttta |
114 |
Q |
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|||||||||| || |||||||| ||||||||||||| | || ||||||||||||||||| ||| || || |||||||||||||| ||||| ||||||| |
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| T |
21942781 |
aacacaacgggtaacaattggaactttgtttggaggcgtccactttttgtttgggagaacgagctattggttgaattattagaggagttggatagtttta |
21942682 |
T |
|
| Q |
115 |
gaggctctgtagaagatgatatttgttggtggagaatggagggtaaaggggttttcatggtgaaatctatgtataagaagttggaggtgttgatgctagc |
214 |
Q |
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|| |||| ||||||||||| |||| |||||||| |||||| ||||||||||| | ||| ||||| ||||||||||||||||||||||||||| ||| |
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| T |
21942681 |
gatcctctatagaagatgatttttggcggtggagattggaggaaaaaggggtttttacggttaaatcaatgtataagaagttggaggtgttgatgttaga |
21942582 |
T |
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| Q |
215 |
ggaaa |
219 |
Q |
| |
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||||| |
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| T |
21942581 |
ggaaa |
21942577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 31 - 211
Target Start/End: Original strand, 26728268 - 26728449
Alignment:
| Q |
31 |
aattggacctttgtttggaggggcccc-tttttgtttgggagaatgagttactgacggaattattagaggatttggagagttttagaggctctgtagaag |
129 |
Q |
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||||||||||||| ||||||| ||||| |||||||||||||||||||||| || |||||||||||| | || ||||| | |||||||| ||| |||| | |
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| T |
26728268 |
aattggacctttgattggaggcgccccctttttgtttgggagaatgagttgctaacggaattattacaagacttggatggctttagagggtctctagagg |
26728367 |
T |
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| Q |
130 |
atgatatttgttggtggagaatggagggtaaaggggttttcatggtgaaatctatgtataagaagttggaggtgttgatgct |
211 |
Q |
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| ||| ||| ||||||||| |||| || || || | || | ||||||||||||||| ||||||||||||||||||||||| |
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| T |
26728368 |
aggatgcttgatggtggagattggaagggaatggtggatttacggtgaaatctatgtacaagaagttggaggtgttgatgct |
26728449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 26728609 - 26728711
Alignment:
| Q |
274 |
ttcggtgaattgtgttttgtgtgaggggaatccggagtcggcgagtcacttgttcattcaatgtgtgtttgctatggaggtttggaatgacgtgttgagg |
373 |
Q |
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|||||||| ||||||||||||||||||||| | ||||| | || ||| ||||||||||| ||| ||||||||||||||| ||||| | ||||| |||| |
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| T |
26728609 |
ttcggtgagctgtgttttgtgtgaggggaatgcagagtccgtgaatcatttgttcattcattgtaagtttgctatggaggtgtggaaaggcgtgtggagg |
26728708 |
T |
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| Q |
374 |
tgg |
376 |
Q |
| |
|
||| |
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|
| T |
26728709 |
tgg |
26728711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 1965 - 2018
Alignment:
| Q |
54 |
cccctttttgtttgggagaatgagttactgacggaattattagaggatttggag |
107 |
Q |
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||||||||||||||||||||||| || || |||||||| || | |||||||||| |
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| T |
1965 |
cccctttttgtttgggagaatgatttgctaacggaattgttggcggatttggag |
2018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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