View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_low_16 (Length: 464)
Name: NF10070_low_16
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 3 - 445
Target Start/End: Complemental strand, 5348674 - 5348232
Alignment:
| Q |
3 |
tggaacctacaagtggtgaaatacttatagatggacttaacatatgctcaattggtcttaaagatataagaatgaagctaagtatcatccctcaagaacc |
102 |
Q |
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| T |
5348674 |
tggaacctacaagtggtgaaatacttatagatggacttaacatatgctcaattggtcttaaagatttaagaatgaagctaagtatcatccctcaagaacc |
5348575 |
T |
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| Q |
103 |
aattcttttcaagggtagtgttagaaccaacttggatccactagacaaattctcagatgatgagatatggaaggtttgataattgaaaatccttgatcat |
202 |
Q |
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| T |
5348574 |
aattcttttcaagggtagtgttagaaccaacttggatccactagaccaattctcagatgatgagatatggaaggtttgataattgaaaatccttgatcat |
5348475 |
T |
|
| Q |
203 |
attgatccttttagattaatttatttagtccttatattatcatattgtactagtaacataataaattaatggttttcatttgtgtataggttttagagat |
302 |
Q |
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| T |
5348474 |
attgatccttttagattaatttatttagtccttatattatcatattgtactagtaacataataaattaatggttttcatttgtgtataggttttagagat |
5348375 |
T |
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| Q |
303 |
gtgtcaacttaaggaggttttatctggactgccacatcttttggactcatcaggttatatagtttcattcatttgctaatattcacttagtttattgtta |
402 |
Q |
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| T |
5348374 |
gtgtcaactcaaggaggttttatctggactgccacatcttttggactcatcaggttatatagtttcattcatttgctaatattcacttagtttattgtta |
5348275 |
T |
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| Q |
403 |
ataatagctaacatgattaacttttgacaatggccaatggcca |
445 |
Q |
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| T |
5348274 |
ataatagctaacatgattaacttttgacaatggtcaatggcca |
5348232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 15128164 - 15128270
Alignment:
| Q |
71 |
agaatgaagctaagtatcatccctcaagaaccaattcttttcaagggtagtgttagaaccaacttggatccactagacaaattctcagatgatgagatat |
170 |
Q |
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| T |
15128164 |
agaatgaagctaagcataatccctcaagaaccaactcttttcaagggcagcattagaacaaacctggaccctctaggcctgtactcagatgatgaaatat |
15128263 |
T |
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| Q |
171 |
ggaaggt |
177 |
Q |
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||||||| |
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| T |
15128264 |
ggaaggt |
15128270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 5287622 - 5287457
Alignment:
| Q |
12 |
caagtggtgaaatacttatagatggacttaacatatgctcaattggtcttaaagatataagaatgaagctaagtatcatccctcaagaaccaattctttt |
111 |
Q |
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| T |
5287622 |
caagaggtgatattcttatagatggggttaacatatgctcaatcggattgaaggatttgagaacaaagctaagcatcattcctcaagaaccaacactttt |
5287523 |
T |
|
| Q |
112 |
caagggtagtgttagaaccaacttggatccactagacaaattctcagatgatgagatatggaaggt |
177 |
Q |
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| T |
5287522 |
caagggcagcattagaacaaacctggaccctctaggcctgtattcagatgatgaaatatggaaggt |
5287457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 174
Target Start/End: Complemental strand, 14946873 - 14946770
Alignment:
| Q |
71 |
agaatgaagctaagtatcatccctcaagaaccaattcttttcaagggtagtgttagaaccaacttggatccactagacaaattctcagatgatgagatat |
170 |
Q |
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||||||| |||||| || |||||||||||||||| |||||||||||| || ||||||| ||| |||| || |||| | | |||||||||||| |||| |
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| T |
14946873 |
agaatgaggctaagcataatccctcaagaaccaactcttttcaagggcagcattagaacaaacctggaccctctaggcctgtactcagatgatgaaatat |
14946774 |
T |
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| Q |
171 |
ggaa |
174 |
Q |
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|||| |
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| T |
14946773 |
ggaa |
14946770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 5316270 - 5316310
Alignment:
| Q |
77 |
aagctaagtatcatccctcaagaaccaattcttttcaaggg |
117 |
Q |
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| T |
5316270 |
aagctaagcatcattcctcaagaaccaactcttttcaaggg |
5316310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 31524185 - 31524097
Alignment:
| Q |
29 |
atagatggacttaacatatgctcaattggtcttaaagatataagaatgaagctaagtatcatccctcaagaaccaattcttttcaaggg |
117 |
Q |
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|||||||| ||||||||||||| || || | |||||| | |||||||||||||| ||||| ||||||||||||| ||||||||||| |
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| T |
31524185 |
atagatgggattaacatatgctcgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaaggg |
31524097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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