View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_low_17 (Length: 454)
Name: NF10070_low_17
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 14 - 437
Target Start/End: Complemental strand, 170601 - 170180
Alignment:
| Q |
14 |
agagcttgaagattttatgcagttgctccacctataatggtagatcaccagatcttagtgcccaccgcccacttaaaacagagaaatatatatatgccaa |
113 |
Q |
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| T |
170601 |
agagcttgaagattttatgcagttgctccaactataatggtagatcaccagatcttagtgcccaccgcccacttaaaacaga--aatatatctatgccaa |
170504 |
T |
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| Q |
114 |
caagataattgaatgaaagtaaatattgaaaaaattaagtattacaaagatgactataaagcatactagcttctctctttcgtataagacccttctttac |
213 |
Q |
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| T |
170503 |
caagataattgaatgaaagtaaatattgaaaaaattaagtattacaaagatgactataaagcatactagcttctctctttcgtataagacccttctttgc |
170404 |
T |
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| Q |
214 |
ttgtaagctcctttttctcatcggcaacatggttgcagataatttaagtggttacaaaactaacataatagatatgcaatgatgatttacgtttctaata |
313 |
Q |
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| T |
170403 |
ttgtaagctcctttttctcatcggcaacatggttgcagataatttaagtggttacaaaactaacataatagatatgcaatgatgatttacgtttctaata |
170304 |
T |
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| Q |
314 |
gttttataccaagtgaatctgtaaatttatcttccattacaaatacgagaagttgataaaaaggacctattagtatttcatcataatctggaatgctcaa |
413 |
Q |
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| T |
170303 |
gttttataccaagtgaatctgtaaatttatcttccattacaaatacaagaagttgataaaaaggacctattagtatttcatcataatctggaatgctgaa |
170204 |
T |
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| Q |
414 |
gataacatatgcaaaggcttgagt |
437 |
Q |
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| T |
170203 |
gataacatattgaaaggcttgagt |
170180 |
T |
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