View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_low_19 (Length: 437)
Name: NF10070_low_19
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Complemental strand, 35685148 - 35684739
Alignment:
| Q |
17 |
aggatgcaatctgcacacttctggaatgacttcaacaagcaagtcggctcctttacggtaaaccaatcgactgataacaacaataacaatttcggatcta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35685148 |
aggatgcaatctgcacacttctggaatgacttcaacaagcaagtcggctcctttacggtaaaccaatcgactgataacaacaataacaatttcggatcta |
35685049 |
T |
|
| Q |
117 |
ctaggtttagaactacggcgctcctcctccgacattggcttaaacttggcagtgtcaacagcattaggtattacaaaaaccttctccggcgccaaacccg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35685048 |
ctaggtttagaactacggcgctcctcctccgacattggcttaaacttggcagtgtcaacagcattaggtattacaaaaaccttctccggcgccaaacccg |
35684949 |
T |
|
| Q |
217 |
acctcaaaaccgtgttctccttacttgtatgagaaacacatatagcctgactcacatctgccaaggtaaactgcaaaaccttgttcatgtgtatacttcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35684948 |
acctcaaaaccgtgttctccttacttgtatgagaaacacatatagcctgactcacatctgccaaggtaaactgcaaaaccttgttcatgtgtatacttcc |
35684849 |
T |
|
| Q |
317 |
agcatcactaaaaccattcaaggaatgatcggtaaacacaaccttgtatcccatgattctagcatgcataagggcctcatgacaaagtgttgaaaaggtt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35684848 |
agcatcactaaaaccattcaaggaatgatcggtaaacacaaccttgtatcccatgattctagcatgcataagggcctcatgacaaagtgttgaaaaggtt |
35684749 |
T |
|
| Q |
417 |
tgatgtccat |
426 |
Q |
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|||||||||| |
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| T |
35684748 |
tgatgtccat |
35684739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 171 - 426
Target Start/End: Original strand, 40672148 - 40672403
Alignment:
| Q |
171 |
tcaacagcattaggtattacaaaaaccttctccggcgccaaacccgacctcaaaaccgtgttctccttacttgtatgagaaacacatatagcctgactca |
270 |
Q |
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||||| |||||||||||||||||||| || || || | |||||| |||| || || ||||| ||||| ||||| |||||||||||||| || ||| ||| |
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| T |
40672148 |
tcaacggcattaggtattacaaaaactttatctggtggcaaacctgaccgtaacactgtgttttccttgcttgtgtgagaaacacatatggcttgagtca |
40672247 |
T |
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| Q |
271 |
catctgccaaggtaaactgcaaaaccttgttcatgtgtatacttccagcatcactaaaaccattcaaggaatgatcggtaaacacaaccttgtatcccat |
370 |
Q |
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|||||||||||||||||||||| |||||||||||||| || |||||||||||| |||||| | || |||||||| ||||||||||||||||||||||| |
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| T |
40672248 |
catctgccaaggtaaactgcaacaccttgttcatgtgaatgcttccagcatcagcaaaaccgtacagagaatgatctgtaaacacaaccttgtatcccat |
40672347 |
T |
|
| Q |
371 |
gattctagcatgcataagggcctcatgacaaagtgttgaaaaggtttgatgtccat |
426 |
Q |
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| |||| |||||||| || | |||||||||| ||| ||||||| ||| ||||||| |
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| T |
40672348 |
ggttcttgcatgcatgagagtttcatgacaaaatgtcgaaaaggcttggtgtccat |
40672403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 40672031 - 40672095
Alignment:
| Q |
42 |
atgacttcaacaagcaagtcggctcctttacggtaaaccaatcgactgataacaacaataacaat |
106 |
Q |
| |
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|||||||| |||||||| || |||| || || ||||||||||| |||||||||||||||||||| |
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| T |
40672031 |
atgacttcgacaagcaaatctactcccttccgataaaccaatcggctgataacaacaataacaat |
40672095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 426
Target Start/End: Complemental strand, 20685601 - 20685573
Alignment:
| Q |
398 |
acaaagtgttgaaaaggtttgatgtccat |
426 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
20685601 |
acaaagtgttgaaaaggtttgatgtccat |
20685573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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