View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_low_20 (Length: 436)
Name: NF10070_low_20
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Original strand, 17184556 - 17184963
Alignment:
| Q |
17 |
caacccaaacaatatagctggcaacaaaaaaccttaaccaacgacacatcaacattaacagatataaagtag-caatgatcaaaagaaattcttaacgtt |
115 |
Q |
| |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17184556 |
caacccaaacaatctggctggcaacaaaaaaccttaaccaacgacacatcaacattaacagatataaagtaggcaatgatcaaaagaaattcttaacgtt |
17184655 |
T |
|
| Q |
116 |
aatcaaaaacttaattcaaaacaattacgaagtgcatcaaagcaatcaagtagacattgaaatcaacacctatgaagaattacaaactaagatttctcga |
215 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17184656 |
aattaaaaacttaattcaaaacaattacgaagtgcatcaaagcaatcaagtagacattgaaatcaacacctatgaagaattacaaactaagatttctcag |
17184755 |
T |
|
| Q |
216 |
tgtagaacggagaaatcaaatcggttgttgagttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaacaaactcttcgatcc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17184756 |
tgtagaacggagaaatcaaatcggttgttgagttgatcccagcgaaggccgatttgatcgcctttattcaatttccttcttttaacaaactcttcgatcc |
17184855 |
T |
|
| Q |
316 |
aagtcttcgtgaagacatagtatttgtctgaagcccatattttgaaaactagcgaatgtagttctttttcgtcaaagtcccaaacattaacttgcactcc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
17184856 |
aagtcttcgtgaagacatagtatttgtctgaagcccatattttgaaaactagcgaatgtagttctttttcgtcaaagtcccaaactttaacttgtactcc |
17184955 |
T |
|
| Q |
416 |
ttcttttt |
423 |
Q |
| |
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|||||||| |
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|
| T |
17184956 |
ttcttttt |
17184963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 53 - 423
Target Start/End: Complemental strand, 17195854 - 17195483
Alignment:
| Q |
53 |
accaacgacacatcaacattaacagatataaagtag-caatgatcaaaagaaattcttaacgttaatcaaaaacttaattcaaaacaattacgaagtgca |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17195854 |
accaacgacacatcaacattaacagatataaagtaggcaatgatcaaaagaaattcttaacgttaatcaaaaacttaattcaaaacaattacgaagtgaa |
17195755 |
T |
|
| Q |
152 |
tcaaagcaatcaagtagacattgaaatcaacacctatgaagaattacaaactaagatttctcgatgtagaacggagaaatcaaatcggttgttgagttga |
251 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
17195754 |
tcaaagcaatcaagtagacattgtaagcaacacctatgaagaattacaaactaagatttctcgatgtaggactgagaaatcaaatcggttgttgagttga |
17195655 |
T |
|
| Q |
252 |
tcccagcgaaggccgatttgatcacctttattcaatttccttcttttaacaaactcttcgatccaagtcttcgtgaagacatagtatttgtctgaagccc |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17195654 |
tcccagcgaaggccgatttgatcacctttattcaatttccttcttttaataaactcttcgatccaagtcttcgtgaagacatagtatttgtctgaagccc |
17195555 |
T |
|
| Q |
352 |
atattttgaaaactagcgaatgtagttctttttcgtcaaagtcccaaacattaacttgcactccttcttttt |
423 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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|
| T |
17195554 |
atattttgaaaactagcgaatgtagttctttttcgtcaaagtcccaaactttaacttgtactccttcttttt |
17195483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 219 - 331
Target Start/End: Complemental strand, 17619911 - 17619799
Alignment:
| Q |
219 |
agaacggagaaatcaaatcggttgttgagttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaacaaactcttcgatccaag |
318 |
Q |
| |
|
|||||||||||||||||||| | |||| ||||||||| ||||| ||||||||||| ||||| |||| || |||||| ||||||||||||| | |||||| |
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| T |
17619911 |
agaacggagaaatcaaatcgttggttgttttgatcccatcgaagaccgatttgatcgcctttcttcagttcccttctgttaacaaactctttggtccaag |
17619812 |
T |
|
| Q |
319 |
tcttcgtgaagac |
331 |
Q |
| |
|
|||| |||||||| |
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|
| T |
17619811 |
tcttggtgaagac |
17619799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 331
Target Start/End: Original strand, 17538445 - 17538557
Alignment:
| Q |
219 |
agaacggagaaatcaaatcggttgttgagttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaacaaactcttcgatccaag |
318 |
Q |
| |
|
|||||||||||||||||||| | |||| | ||||||| ||||| |||||||||| |||| || | || |||||| ||||||||||||| | |||||| |
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| T |
17538445 |
agaacggagaaatcaaatcgttggttgtttcgatcccatcgaagaacgatttgatcgtctttcttgagttcccttctgttaacaaactctttggtccaag |
17538544 |
T |
|
| Q |
319 |
tcttcgtgaagac |
331 |
Q |
| |
|
| || |||||||| |
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|
| T |
17538545 |
tattggtgaagac |
17538557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 331
Target Start/End: Complemental strand, 17694058 - 17693946
Alignment:
| Q |
219 |
agaacggagaaatcaaatcggttgttgagttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaacaaactcttcgatccaag |
318 |
Q |
| |
|
|||||||||||||||||||| | |||| | ||||||| ||||| |||||||||| |||| || | || |||||| ||||||||||||| | |||||| |
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|
| T |
17694058 |
agaacggagaaatcaaatcgttggttgtttcgatcccatcgaagagcgatttgatcgtctttcttgagttcccttctgttaacaaactctttggtccaag |
17693959 |
T |
|
| Q |
319 |
tcttcgtgaagac |
331 |
Q |
| |
|
| || |||||||| |
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|
| T |
17693958 |
ttttggtgaagac |
17693946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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