View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10070_low_21 (Length: 435)
Name: NF10070_low_21
Description: NF10070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10070_low_21 |
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| [»] scaffold0202 (2 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 344
Target Start/End: Complemental strand, 31043265 - 31042941
Alignment:
| Q |
20 |
agacgaatattttcttataggtaaacttggtatgtgatgtttaacattttattggtgtgggactcaaagtggagagactaataaatggagaagattttga |
119 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| |
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| T |
31043265 |
agacgaatatttgtttataggtaaacttggtatgtgatgtttaacattttattggtgtgggactcaaagtggagaagctaataaatggagaggatcttga |
31043166 |
T |
|
| Q |
120 |
ctcctcaaagtgggtgttacttattactcctgcttgctcattgagtagagaaactataaccttttctttatcctattagcttaagtcatggctttttata |
219 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
31043165 |
cttctcaaagtgggtgttacttattactcctgcttgctcattcagtagagaaactataaccttttcgttatcctattagcttaagtcatggcttttcata |
31043066 |
T |
|
| Q |
220 |
tcaaaaaagacctaaagtttgtatatgttattctttagaccttagaacaagatgtctgcgacgaaattcaacaccaattcacctctcatgtctgtgagaa |
319 |
Q |
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| T |
31043065 |
tcaaaatagacccaaagtttgtatatgttattctttagaccttagaacaagatgtctgcgaagaaattatacaccaattcacctctcatggctgtgagaa |
31042966 |
T |
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| Q |
320 |
tgaggatgatgctgttttagataca |
344 |
Q |
| |
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| ||||||||||||||||||||||| |
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| T |
31042965 |
tcaggatgatgctgttttagataca |
31042941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 268 - 417
Target Start/End: Complemental strand, 31106611 - 31106462
Alignment:
| Q |
268 |
aagatgtctgcgacgaaattcaacaccaattcacctctcatgtctgtgagaatgaggatgatgctgttttagatacacgtgaaacactgtcacatttaac |
367 |
Q |
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|||| ||||| || ||| |||||||||| | ||||||| |||| ||||| | ||| |||||| || |||||||| ||| ||||||||| ||||||||||| |
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| T |
31106611 |
aagacgtctgagaggaatttcaacaccagtgcacctcttatgtatgtgacagtgacgatgatacttttttagatgcacatgaaacactatcacatttaac |
31106512 |
T |
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| Q |
368 |
aaaatcattttaaatacaatatgtatttatcagcatcatattatatggtc |
417 |
Q |
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| T |
31106511 |
aaaatcattttaaatgcattatgtatttaccattatcatattatatggtc |
31106462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 417
Target Start/End: Original strand, 31094768 - 31094869
Alignment:
| Q |
316 |
agaatgaggatgatgctgttttagatacacgtgaaacactgtcacatttaacaaaatcattttaaatacaatatgtatttatcagcatcatattatatgg |
415 |
Q |
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||||||| |||||| || |||||||| ||| |||| ||| ||| |||||||||||| ||||||||||||| ||||||||| || |||||||||||||| |
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| T |
31094768 |
agaatgatgatgatacttttttagatgcacatgaagcaccgtcgcatttaacaaaaccattttaaatacattatgtatttcccatgatcatattatatgg |
31094867 |
T |
|
| Q |
416 |
tc |
417 |
Q |
| |
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|| |
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| T |
31094868 |
tc |
31094869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 31108567 - 31108510
Alignment:
| Q |
200 |
ttaagtcatggctttttatatcaaaaaagacctaaagtttgtatatgttattctttag |
257 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| |
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| T |
31108567 |
ttaagtcatggctttttatatcaaaatagacccaaagtttgtatatattattctttag |
31108510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 385
Target Start/End: Original strand, 21181561 - 21181631
Alignment:
| Q |
315 |
gagaatgaggatgatgctgttttagatacacgtgaaacactgtcacatttaacaaaatcattttaaataca |
385 |
Q |
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| T |
21181561 |
gagaataatgatgatgcttttttagatgctcatgaaacattgtcacatttaacataatcatttttaataca |
21181631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 394
Target Start/End: Original strand, 21150280 - 21150347
Alignment:
| Q |
327 |
gatgctgttttagatacacgtgaaacactgtcacatttaacaaaatcattttaaatacaatatgtatt |
394 |
Q |
| |
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|||||| | |||||| ||| ||||||||| |||||||||||| ||||| |||||||||| ||| |||| |
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| T |
21150280 |
gatgctttattagatgcacatgaaacactctcacatttaacataatcaatttaaatacattatatatt |
21150347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 394
Target Start/End: Complemental strand, 31050554 - 31050475
Alignment:
| Q |
310 |
tctgtgagaatgaggatgatgctgttttagatacacgtgaaacactgtcacatttaacaaaatcattttaaatacaatatgtatt |
394 |
Q |
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| T |
31050554 |
tctgttagaatgacgatgatgtttttttagatgcacatgaagcactgt-----ttaacaaaaccattttaaatacattatgtatt |
31050475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 310 - 417
Target Start/End: Original strand, 3478 - 3585
Alignment:
| Q |
310 |
tctgtgagaatgaggatgatgctgttttagatacacgtgaaacactgtcacatttaacaaaatcattttaaatacaatatgtatttatcagcatcatatt |
409 |
Q |
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||||| ||||||| |||||| || ||||||| ||| |||| ||||| |||||||||||||| ||||||||||||| ||||||||| || |||||||| |
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| T |
3478 |
tctgttagaatgacgatgatacttttttagaagcacatgaagcactgccacatttaacaaaaccattttaaatacattatgtatttcccatgatcatatt |
3577 |
T |
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| Q |
410 |
atatggtc |
417 |
Q |
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||| |||| |
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| T |
3578 |
ataaggtc |
3585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 3374 - 3431
Alignment:
| Q |
168 |
agaaactataa-ccttttctttatcctattagcttaagtcatggctttttatatcaaa |
224 |
Q |
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||||||||||| ||||||| |||||| ||||| |||| ||||||| |||||||||||| |
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| T |
3374 |
agaaactataagccttttcattatcccattagtttaactcatggcattttatatcaaa |
3431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 396
Target Start/End: Complemental strand, 65273 - 65192
Alignment:
| Q |
315 |
gagaatgaggatgatgctgttttagatacacgtgaaacactgtcacatttaacaaaatcattttaaatacaatatgtattta |
396 |
Q |
| |
|
|||||||| || |||||| ||||| || ||| ||||||||| |||||||||||| ||||||| |||||||| ||| |||||| |
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| T |
65273 |
gagaatgatgaagatgcttttttaaatgcacatgaaacactatcacatttaacataatcattgtaaatacattatatattta |
65192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 2805335 - 2805368
Alignment:
| Q |
89 |
tggagagactaataaatggagaagattttgactc |
122 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
2805335 |
tggagagactaataaatggagaagattttgactc |
2805368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 3494 - 3453
Alignment:
| Q |
355 |
tgtcacatttaacaaaatcattttaaatacaatatgtattta |
396 |
Q |
| |
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|||||||||||||| ||||||||| |||||| |||||||||| |
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|
| T |
3494 |
tgtcacatttaacagaatcattttgaatacattatgtattta |
3453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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